Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 AC005225.4-201ENST00000557330 545 ntBASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 AC044860.1-202ENST00000559481 777 ntBASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PAAF1Q9BRP4 KRT8P12-202ENST00000472924 1397 ntBASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 AC135586.1-201ENST00000539323 574 ntBASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 AC104794.3-201ENST00000566840 1248 ntBASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PAAF1Q9BRP4 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 AC079328.2-201ENST00000561241 3354 ntBASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 CALY-202ENST00000368555 783 ntTSL 2 BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 SPDYE17-201ENST00000412399 783 ntBASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 RN7SL618P-201ENST00000477850 296 ntBASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 AC025048.6-201ENST00000634326 1161 ntBASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PAAF1Q9BRP4 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.39■□□□□ 0.38
PAAF1Q9BRP4 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.39■□□□□ 0.38
PAAF1Q9BRP4 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
PAAF1Q9BRP4 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.38
PAAF1Q9BRP4 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.39■□□□□ 0.38
PAAF1Q9BRP4 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PAAF1Q9BRP4 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PAAF1Q9BRP4 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PAAF1Q9BRP4 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
PAAF1Q9BRP4 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms