Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.46■□□□□ 0.23
CPNE1Q99829 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CPNE1Q99829 FAM197Y8-203ENST00000450145 560 ntBASIC16.46■□□□□ 0.23
CPNE1Q99829 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CPNE1Q99829 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.23
CPNE1Q99829 MIR3909-201ENST00000579518 119 ntBASIC16.46■□□□□ 0.23
CPNE1Q99829 U1.21-201ENST00000580816 167 ntBASIC16.46■□□□□ 0.23
CPNE1Q99829 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.46■□□□□ 0.23
CPNE1Q99829 AC004790.2-201ENST00000623588 572 ntBASIC16.46■□□□□ 0.23
CPNE1Q99829 TP73-AS1-207ENST00000624167 988 ntBASIC16.46■□□□□ 0.23
CPNE1Q99829 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CPNE1Q99829 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
CPNE1Q99829 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CPNE1Q99829 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CPNE1Q99829 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CPNE1Q99829 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CPNE1Q99829 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
CPNE1Q99829 U82695.1-201ENST00000635752 1889 ntBASIC16.46■□□□□ 0.22
CPNE1Q99829 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CPNE1Q99829 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CPNE1Q99829 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CPNE1Q99829 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CPNE1Q99829 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.45■□□□□ 0.22
CPNE1Q99829 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CPNE1Q99829 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.45■□□□□ 0.22
CPNE1Q99829 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPNE1Q99829 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPNE1Q99829 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPNE1Q99829 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CPNE1Q99829 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPNE1Q99829 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
CPNE1Q99829 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CPNE1Q99829 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
CPNE1Q99829 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPNE1Q99829 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.45■□□□□ 0.22
CPNE1Q99829 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.45■□□□□ 0.22
CPNE1Q99829 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.45■□□□□ 0.22
CPNE1Q99829 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.45■□□□□ 0.22
CPNE1Q99829 HNRNPDP1-201ENST00000439535 754 ntBASIC16.45■□□□□ 0.22
CPNE1Q99829 AF186996.4-201ENST00000467186 377 ntBASIC16.45■□□□□ 0.22
CPNE1Q99829 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPNE1Q99829 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.45■□□□□ 0.22
CPNE1Q99829 AC012640.2-201ENST00000561606 901 ntBASIC16.45■□□□□ 0.22
CPNE1Q99829 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.45■□□□□ 0.22
CPNE1Q99829 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.45■□□□□ 0.22
CPNE1Q99829 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CPNE1Q99829 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPNE1Q99829 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPNE1Q99829 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPNE1Q99829 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPNE1Q99829 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPNE1Q99829 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.45■□□□□ 0.22
CPNE1Q99829 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.45■□□□□ 0.22
CPNE1Q99829 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPNE1Q99829 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CPNE1Q99829 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
CPNE1Q99829 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.45■□□□□ 0.22
CPNE1Q99829 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPNE1Q99829 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPNE1Q99829 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CPNE1Q99829 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CPNE1Q99829 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPNE1Q99829 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPNE1Q99829 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.44■□□□□ 0.22
CPNE1Q99829 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPNE1Q99829 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.44■□□□□ 0.22
CPNE1Q99829 KRT18P67-201ENST00000432816 1264 ntBASIC16.44■□□□□ 0.22
CPNE1Q99829 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.44■□□□□ 0.22
CPNE1Q99829 UNC93B7-201ENST00000509439 705 ntBASIC16.44■□□□□ 0.22
CPNE1Q99829 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.44■□□□□ 0.22
CPNE1Q99829 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
CPNE1Q99829 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.44■□□□□ 0.22
CPNE1Q99829 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.44■□□□□ 0.22
CPNE1Q99829 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CPNE1Q99829 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPNE1Q99829 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPNE1Q99829 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CPNE1Q99829 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.44■□□□□ 0.22
CPNE1Q99829 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPNE1Q99829 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPNE1Q99829 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CPNE1Q99829 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.44■□□□□ 0.22
CPNE1Q99829 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPNE1Q99829 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPNE1Q99829 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPNE1Q99829 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.44■□□□□ 0.22
CPNE1Q99829 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CPNE1Q99829 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CPNE1Q99829 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CPNE1Q99829 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CPNE1Q99829 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CPNE1Q99829 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CPNE1Q99829 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CPNE1Q99829 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CPNE1Q99829 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CPNE1Q99829 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CPNE1Q99829 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CPNE1Q99829 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.43■□□□□ 0.22
CPNE1Q99829 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
CPNE1Q99829 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms