Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
NKX3-1Q99801 PC-214ENST00000628663 1470 ntTSL 5 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NKX3-1Q99801 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NKX3-1Q99801 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NKX3-1Q99801 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NKX3-1Q99801 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
NKX3-1Q99801 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
NKX3-1Q99801 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
NKX3-1Q99801 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC14.42□□□□□ -0.1
NKX3-1Q99801 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
NKX3-1Q99801 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
NKX3-1Q99801 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
NKX3-1Q99801 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
NKX3-1Q99801 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
NKX3-1Q99801 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
NKX3-1Q99801 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
NKX3-1Q99801 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
NKX3-1Q99801 AC092384.3-202ENST00000564646 2873 ntBASIC14.41□□□□□ -0.1
NKX3-1Q99801 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
NKX3-1Q99801 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
NKX3-1Q99801 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
NKX3-1Q99801 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 FICD-205ENST00000552758 603 ntTSL 2 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 RN7SL510P-201ENST00000581311 263 ntBASIC14.41□□□□□ -0.1
NKX3-1Q99801 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 AC013467.2-201ENST00000605472 835 ntBASIC14.41□□□□□ -0.1
NKX3-1Q99801 IFNL4P1-201ENST00000607083 540 ntBASIC14.41□□□□□ -0.1
NKX3-1Q99801 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
NKX3-1Q99801 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
NKX3-1Q99801 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
NKX3-1Q99801 AC073347.1-201ENST00000421633 2643 ntBASIC14.41□□□□□ -0.1
NKX3-1Q99801 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
NKX3-1Q99801 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
NKX3-1Q99801 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
NKX3-1Q99801 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC14.41□□□□□ -0.1
NKX3-1Q99801 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
NKX3-1Q99801 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
NKX3-1Q99801 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
NKX3-1Q99801 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
NKX3-1Q99801 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.4□□□□□ -0.1
NKX3-1Q99801 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC14.4□□□□□ -0.1
NKX3-1Q99801 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
NKX3-1Q99801 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
NKX3-1Q99801 AC006449.6-201ENST00000612330 2296 ntBASIC14.4□□□□□ -0.1
NKX3-1Q99801 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NKX3-1Q99801 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NKX3-1Q99801 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NKX3-1Q99801 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.4□□□□□ -0.1
NKX3-1Q99801 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
NKX3-1Q99801 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NKX3-1Q99801 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
NKX3-1Q99801 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC14.4□□□□□ -0.1
NKX3-1Q99801 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.4□□□□□ -0.1
NKX3-1Q99801 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.4□□□□□ -0.1
NKX3-1Q99801 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.4□□□□□ -0.1
NKX3-1Q99801 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NKX3-1Q99801 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC14.4□□□□□ -0.1
NKX3-1Q99801 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
NKX3-1Q99801 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NKX3-1Q99801 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
NKX3-1Q99801 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC14.4□□□□□ -0.1
NKX3-1Q99801 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC14.4□□□□□ -0.1
NKX3-1Q99801 IGHV3OR16-7-201ENST00000604106 360 ntBASIC14.4□□□□□ -0.1
NKX3-1Q99801 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC14.4□□□□□ -0.1
NKX3-1Q99801 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
NKX3-1Q99801 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
NKX3-1Q99801 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC14.4□□□□□ -0.1
NKX3-1Q99801 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
NKX3-1Q99801 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
NKX3-1Q99801 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
NKX3-1Q99801 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC14.4□□□□□ -0.1
NKX3-1Q99801 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms