Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 C2-206ENST00000442278 2434 ntTSL 2 BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
LINC00643Q86TS7 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 BX640514.1-201ENST00000583223 1918 ntBASIC10.21□□□□□ -0.77
LINC00643Q86TS7 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 RHOD-202ENST00000532559 538 ntTSL 3 BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 AC009065.1-201ENST00000564055 1225 ntBASIC10.21□□□□□ -0.77
LINC00643Q86TS7 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC10.21□□□□□ -0.77
LINC00643Q86TS7 RAP2CP1-201ENST00000605103 478 ntBASIC10.21□□□□□ -0.77
LINC00643Q86TS7 AL035685.1-201ENST00000636663 812 ntBASIC10.21□□□□□ -0.77
LINC00643Q86TS7 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 KRT8P7-201ENST00000533003 1432 ntBASIC10.21□□□□□ -0.78
LINC00643Q86TS7 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 AC092919.2-201ENST00000623631 1645 ntBASIC10.21□□□□□ -0.78
LINC00643Q86TS7 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 AC089987.1-201ENST00000551654 2209 ntBASIC10.21□□□□□ -0.78
LINC00643Q86TS7 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 AC015909.5-201ENST00000624336 2266 ntBASIC10.21□□□□□ -0.78
LINC00643Q86TS7 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
LINC00643Q86TS7 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 FAM120C-202ENST00000375180 8057 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 HLCS-201ENST00000336648 6010 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
LINC00643Q86TS7 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms