Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC12.42□□□□□ -0.42
FOXA3P55318 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC12.42□□□□□ -0.42
FOXA3P55318 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC12.42□□□□□ -0.42
FOXA3P55318 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC12.42□□□□□ -0.42
FOXA3P55318 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 CICP4-201ENST00000447359 2812 ntBASIC12.42□□□□□ -0.42
FOXA3P55318 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC12.42□□□□□ -0.42
FOXA3P55318 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 PTENP1-202ENST00000532280 3996 ntBASIC12.41□□□□□ -0.42
FOXA3P55318 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC12.41□□□□□ -0.42
FOXA3P55318 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC12.41□□□□□ -0.42
FOXA3P55318 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC12.41□□□□□ -0.42
FOXA3P55318 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
FOXA3P55318 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
FOXA3P55318 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC12.41□□□□□ -0.42
FOXA3P55318 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC12.41□□□□□ -0.42
FOXA3P55318 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC12.41□□□□□ -0.42
FOXA3P55318 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC12.41□□□□□ -0.42
FOXA3P55318 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 POU5F1P6-201ENST00000466990 990 ntBASIC12.41□□□□□ -0.42
FOXA3P55318 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC12.41□□□□□ -0.42
FOXA3P55318 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC12.41□□□□□ -0.42
FOXA3P55318 ZNF444P1-201ENST00000559497 298 ntBASIC12.41□□□□□ -0.42
FOXA3P55318 MIR4785-201ENST00000585005 73 ntBASIC12.41□□□□□ -0.42
FOXA3P55318 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC12.41□□□□□ -0.42
FOXA3P55318 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC12.41□□□□□ -0.42
FOXA3P55318 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC12.41□□□□□ -0.42
FOXA3P55318 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC12.41□□□□□ -0.42
FOXA3P55318 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC12.41□□□□□ -0.42
FOXA3P55318 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC12.41□□□□□ -0.42
FOXA3P55318 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC12.41□□□□□ -0.42
FOXA3P55318 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC12.41□□□□□ -0.42
FOXA3P55318 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 AC104581.4-201ENST00000623126 3052 ntBASIC12.41□□□□□ -0.42
FOXA3P55318 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC12.41□□□□□ -0.42
FOXA3P55318 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
FOXA3P55318 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
FOXA3P55318 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC12.4□□□□□ -0.42
FOXA3P55318 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 GOLGA8DP-202ENST00000341390 2184 ntBASIC12.4□□□□□ -0.42
FOXA3P55318 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
FOXA3P55318 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC12.4□□□□□ -0.42
FOXA3P55318 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
FOXA3P55318 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
FOXA3P55318 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 CD9-202ENST00000382515 1229 ntTSL 5 BASIC12.4□□□□□ -0.42
FOXA3P55318 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 ACTG1P4-201ENST00000425123 1122 ntBASIC12.4□□□□□ -0.42
FOXA3P55318 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
FOXA3P55318 GCSHP5-201ENST00000443090 522 ntBASIC12.4□□□□□ -0.42
FOXA3P55318 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC12.4□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms