Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
MSH3P20585 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MSH3P20585 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSH3P20585 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.39■□□□□ 0.21
MSH3P20585 AL355306.1-201ENST00000415580 579 ntBASIC16.39■□□□□ 0.21
MSH3P20585 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.39■□□□□ 0.21
MSH3P20585 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
MSH3P20585 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.39■□□□□ 0.21
MSH3P20585 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.39■□□□□ 0.21
MSH3P20585 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.39■□□□□ 0.21
MSH3P20585 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.39■□□□□ 0.21
MSH3P20585 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSH3P20585 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSH3P20585 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
MSH3P20585 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSH3P20585 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
MSH3P20585 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSH3P20585 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSH3P20585 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSH3P20585 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSH3P20585 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
MSH3P20585 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSH3P20585 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSH3P20585 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSH3P20585 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSH3P20585 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.39■□□□□ 0.21
MSH3P20585 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSH3P20585 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MSH3P20585 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSH3P20585 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.38■□□□□ 0.21
MSH3P20585 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSH3P20585 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSH3P20585 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
MSH3P20585 PCGF3-213ENST00000620529 1899 ntBASIC16.38■□□□□ 0.21
MSH3P20585 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
MSH3P20585 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
MSH3P20585 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSH3P20585 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSH3P20585 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSH3P20585 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSH3P20585 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSH3P20585 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.38■□□□□ 0.21
MSH3P20585 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
MSH3P20585 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.38■□□□□ 0.21
MSH3P20585 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
MSH3P20585 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.38■□□□□ 0.21
MSH3P20585 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.38■□□□□ 0.21
MSH3P20585 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
MSH3P20585 MIR4469-201ENST00000583919 79 ntBASIC16.38■□□□□ 0.21
MSH3P20585 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.38■□□□□ 0.21
MSH3P20585 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSH3P20585 PCDH8P1-201ENST00000428983 2773 ntBASIC16.38■□□□□ 0.21
MSH3P20585 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSH3P20585 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSH3P20585 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.38■□□□□ 0.21
MSH3P20585 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
MSH3P20585 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
MSH3P20585 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSH3P20585 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
MSH3P20585 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSH3P20585 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
MSH3P20585 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
MSH3P20585 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSH3P20585 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
MSH3P20585 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.37■□□□□ 0.21
MSH3P20585 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSH3P20585 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSH3P20585 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSH3P20585 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSH3P20585 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.37■□□□□ 0.21
MSH3P20585 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.37■□□□□ 0.21
MSH3P20585 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSH3P20585 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
MSH3P20585 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSH3P20585 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSH3P20585 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSH3P20585 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
MSH3P20585 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.37■□□□□ 0.21
MSH3P20585 MIR1233-2-201ENST00000408138 82 ntBASIC16.37■□□□□ 0.21
MSH3P20585 MIR1233-1-201ENST00000408722 82 ntBASIC16.37■□□□□ 0.21
MSH3P20585 TFAMP1-201ENST00000412727 736 ntBASIC16.37■□□□□ 0.21
MSH3P20585 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.37■□□□□ 0.21
MSH3P20585 SPDYE11-202ENST00000450699 704 ntBASIC16.37■□□□□ 0.21
MSH3P20585 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.37■□□□□ 0.21
MSH3P20585 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.37■□□□□ 0.21
MSH3P20585 SPDYE9P-201ENST00000570642 692 ntBASIC16.37■□□□□ 0.21
MSH3P20585 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
MSH3P20585 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.37■□□□□ 0.21
MSH3P20585 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.37■□□□□ 0.21
MSH3P20585 SPDYE10P-202ENST00000612005 668 ntBASIC16.37■□□□□ 0.21
MSH3P20585 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
MSH3P20585 SPDYE8P-202ENST00000612377 668 ntBASIC16.37■□□□□ 0.21
MSH3P20585 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
MSH3P20585 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSH3P20585 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
MSH3P20585 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
MSH3P20585 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
MSH3P20585 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSH3P20585 AKAP8P1-201ENST00000434743 1349 ntBASIC16.37■□□□□ 0.21
MSH3P20585 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms