Protein–RNA interactions for Protein: P04440

HLA-DPB1, HLA class II histocompatibility antigen, DP beta 1 chain, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPB1P04440 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HLA-DPB1P04440 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HLA-DPB1P04440 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 TOLLIP-AS1-201ENST00000530897 939 ntBASIC14.86□□□□□ -0.03
HLA-DPB1P04440 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 MTDHP3-201ENST00000594186 672 ntBASIC14.86□□□□□ -0.03
HLA-DPB1P04440 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 AC006058.4-201ENST00000624016 1670 ntBASIC14.86□□□□□ -0.03
HLA-DPB1P04440 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DPB1P04440 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 AC006277.1-201ENST00000624348 1610 ntBASIC14.85□□□□□ -0.03
HLA-DPB1P04440 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 KRT8P49-201ENST00000604166 1432 ntBASIC14.85□□□□□ -0.03
HLA-DPB1P04440 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 AL020989.1-201ENST00000422979 469 ntBASIC14.85□□□□□ -0.03
HLA-DPB1P04440 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.85□□□□□ -0.03
HLA-DPB1P04440 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-DPB1P04440 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
HLA-DPB1P04440 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-DPB1P04440 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC14.84□□□□□ -0.03
HLA-DPB1P04440 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-DPB1P04440 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms