Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.95■□□□□ 0.46
CLDN3O15551 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.95■□□□□ 0.46
CLDN3O15551 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CLDN3O15551 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.95■□□□□ 0.46
CLDN3O15551 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CLDN3O15551 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CLDN3O15551 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CLDN3O15551 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 AL139400.1-201ENST00000366220 510 ntBASIC17.95■□□□□ 0.46
CLDN3O15551 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.95■□□□□ 0.46
CLDN3O15551 RBPMS2P1-201ENST00000437762 623 ntBASIC17.95■□□□□ 0.46
CLDN3O15551 AC093724.1-201ENST00000448659 1027 ntBASIC17.95■□□□□ 0.46
CLDN3O15551 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CLDN3O15551 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.95■□□□□ 0.46
CLDN3O15551 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.95■□□□□ 0.46
CLDN3O15551 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.95■□□□□ 0.46
CLDN3O15551 LINC00628-201ENST00000628516 1289 ntBASIC17.95■□□□□ 0.46
CLDN3O15551 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.95■□□□□ 0.46
CLDN3O15551 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CLDN3O15551 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.95■□□□□ 0.46
CLDN3O15551 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.95■□□□□ 0.46
CLDN3O15551 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.95■□□□□ 0.46
CLDN3O15551 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 PCDH8P1-201ENST00000428983 2773 ntBASIC17.95■□□□□ 0.46
CLDN3O15551 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CLDN3O15551 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.95■□□□□ 0.46
CLDN3O15551 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.95■□□□□ 0.46
CLDN3O15551 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CLDN3O15551 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.94■□□□□ 0.46
CLDN3O15551 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.94■□□□□ 0.46
CLDN3O15551 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.94■□□□□ 0.46
CLDN3O15551 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CLDN3O15551 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
CLDN3O15551 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.94■□□□□ 0.46
CLDN3O15551 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.94■□□□□ 0.46
CLDN3O15551 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.94■□□□□ 0.46
CLDN3O15551 GPS2P2-201ENST00000430745 888 ntBASIC17.94■□□□□ 0.46
CLDN3O15551 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.94■□□□□ 0.46
CLDN3O15551 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 AC004449.1-201ENST00000564240 433 ntBASIC17.94■□□□□ 0.46
CLDN3O15551 SPTSSB-204ENST00000617024 1292 ntBASIC17.94■□□□□ 0.46
CLDN3O15551 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.94■□□□□ 0.46
CLDN3O15551 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.94■□□□□ 0.46
CLDN3O15551 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
CLDN3O15551 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CLDN3O15551 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLDN3O15551 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CLDN3O15551 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLDN3O15551 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLDN3O15551 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLDN3O15551 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.93■□□□□ 0.46
CLDN3O15551 CROCCP1-201ENST00000426910 5675 ntBASIC17.93■□□□□ 0.46
CLDN3O15551 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CLDN3O15551 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.93■□□□□ 0.46
CLDN3O15551 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLDN3O15551 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLDN3O15551 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLDN3O15551 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLDN3O15551 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CLDN3O15551 AC005622.1-201ENST00000636801 1703 ntBASIC17.93■□□□□ 0.46
CLDN3O15551 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLDN3O15551 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLDN3O15551 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CLDN3O15551 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.93■□□□□ 0.46
CLDN3O15551 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms