Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC3O15379 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC3O15379 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
HDAC3O15379 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.05■□□□□ 0.16
HDAC3O15379 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC3O15379 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.05■□□□□ 0.16
HDAC3O15379 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC3O15379 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC3O15379 PPT1-215ENST00000641471 2368 ntBASIC16.05■□□□□ 0.16
HDAC3O15379 AC006058.4-201ENST00000624016 1670 ntBASIC16.05■□□□□ 0.16
HDAC3O15379 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC3O15379 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC3O15379 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC3O15379 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC3O15379 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC3O15379 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
HDAC3O15379 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC3O15379 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
HDAC3O15379 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.04■□□□□ 0.16
HDAC3O15379 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC3O15379 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC3O15379 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
HDAC3O15379 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
HDAC3O15379 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.04■□□□□ 0.16
HDAC3O15379 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC3O15379 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.04■□□□□ 0.16
HDAC3O15379 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC3O15379 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.04■□□□□ 0.16
HDAC3O15379 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.04■□□□□ 0.16
HDAC3O15379 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.04■□□□□ 0.16
HDAC3O15379 AC107918.2-201ENST00000530817 355 ntBASIC16.04■□□□□ 0.16
HDAC3O15379 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.04■□□□□ 0.16
HDAC3O15379 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
HDAC3O15379 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.04■□□□□ 0.16
HDAC3O15379 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.04■□□□□ 0.16
HDAC3O15379 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.04■□□□□ 0.16
HDAC3O15379 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.04■□□□□ 0.16
HDAC3O15379 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC3O15379 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.04■□□□□ 0.16
HDAC3O15379 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
HDAC3O15379 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.04■□□□□ 0.16
HDAC3O15379 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC3O15379 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.04■□□□□ 0.16
HDAC3O15379 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.04■□□□□ 0.16
HDAC3O15379 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC3O15379 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.04■□□□□ 0.16
HDAC3O15379 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.04■□□□□ 0.16
HDAC3O15379 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.04■□□□□ 0.16
HDAC3O15379 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
HDAC3O15379 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
HDAC3O15379 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
HDAC3O15379 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
HDAC3O15379 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.03■□□□□ 0.16
HDAC3O15379 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.03■□□□□ 0.16
HDAC3O15379 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.03■□□□□ 0.16
HDAC3O15379 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.03■□□□□ 0.16
HDAC3O15379 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
HDAC3O15379 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.03■□□□□ 0.16
HDAC3O15379 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.03■□□□□ 0.16
HDAC3O15379 HCG4-201ENST00000418983 998 ntBASIC16.03■□□□□ 0.16
HDAC3O15379 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.03■□□□□ 0.16
HDAC3O15379 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.03■□□□□ 0.16
HDAC3O15379 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.03■□□□□ 0.16
HDAC3O15379 AC005412.3-201ENST00000580309 715 ntBASIC16.03■□□□□ 0.16
HDAC3O15379 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.03■□□□□ 0.16
HDAC3O15379 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.03■□□□□ 0.16
HDAC3O15379 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
HDAC3O15379 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.03■□□□□ 0.16
HDAC3O15379 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC3O15379 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
HDAC3O15379 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.03■□□□□ 0.16
HDAC3O15379 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.02■□□□□ 0.16
HDAC3O15379 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.02■□□□□ 0.16
HDAC3O15379 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.02■□□□□ 0.16
HDAC3O15379 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.02■□□□□ 0.16
HDAC3O15379 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
HDAC3O15379 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
HDAC3O15379 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms