Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP1O15259 SPDYE19P-201ENST00000338590 713 ntBASIC20.67■□□□□ 0.9
NPHP1O15259 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
NPHP1O15259 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
NPHP1O15259 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
NPHP1O15259 DFFBP1-201ENST00000433250 979 ntBASIC20.67■□□□□ 0.9
NPHP1O15259 U91328.1-201ENST00000437528 223 ntBASIC20.67■□□□□ 0.9
NPHP1O15259 INE1-201ENST00000456273 945 ntBASIC20.67■□□□□ 0.9
NPHP1O15259 AC011495.1-201ENST00000498085 584 ntBASIC20.67■□□□□ 0.9
NPHP1O15259 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
NPHP1O15259 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP1O15259 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC20.67■□□□□ 0.9
NPHP1O15259 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC20.67■□□□□ 0.9
NPHP1O15259 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP1O15259 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP1O15259 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP1O15259 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP1O15259 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP1O15259 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP1O15259 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP1O15259 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP1O15259 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP1O15259 AL138688.1-201ENST00000624851 1594 ntBASIC20.67■□□□□ 0.9
NPHP1O15259 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.67■□□□□ 0.9
NPHP1O15259 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP1O15259 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.67■□□□□ 0.9
NPHP1O15259 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP1O15259 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP1O15259 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP1O15259 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP1O15259 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
NPHP1O15259 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP1O15259 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP1O15259 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
NPHP1O15259 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP1O15259 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP1O15259 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
NPHP1O15259 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC20.66■□□□□ 0.9
NPHP1O15259 DGCR5-201ENST00000399539 862 ntBASIC20.66■□□□□ 0.9
NPHP1O15259 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP1O15259 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP1O15259 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP1O15259 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP1O15259 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP1O15259 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP1O15259 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC20.66■□□□□ 0.9
NPHP1O15259 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP1O15259 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP1O15259 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP1O15259 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP1O15259 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC20.66■□□□□ 0.9
NPHP1O15259 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP1O15259 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC20.66■□□□□ 0.9
NPHP1O15259 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP1O15259 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.66■□□□□ 0.9
NPHP1O15259 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP1O15259 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
NPHP1O15259 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP1O15259 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP1O15259 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP1O15259 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
NPHP1O15259 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC20.65■□□□□ 0.9
NPHP1O15259 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
NPHP1O15259 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP1O15259 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP1O15259 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC20.65■□□□□ 0.9
NPHP1O15259 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP1O15259 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP1O15259 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP1O15259 BTBD7P1-201ENST00000447253 1453 ntBASIC20.65■□□□□ 0.9
NPHP1O15259 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP1O15259 AL391825.1-201ENST00000457671 1364 ntBASIC20.65■□□□□ 0.9
NPHP1O15259 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
NPHP1O15259 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP1O15259 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP1O15259 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC20.65■□□□□ 0.9
NPHP1O15259 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC20.65■□□□□ 0.9
NPHP1O15259 DOC2GP-202ENST00000514950 1163 ntBASIC20.65■□□□□ 0.9
NPHP1O15259 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC20.65■□□□□ 0.9
NPHP1O15259 AC017083.2-201ENST00000608069 979 ntBASIC20.65■□□□□ 0.9
NPHP1O15259 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP1O15259 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC20.65■□□□□ 0.9
NPHP1O15259 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP1O15259 FER1L4-210ENST00000615531 5998 ntBASIC20.65■□□□□ 0.9
NPHP1O15259 AC134043.2-201ENST00000624206 2238 ntBASIC20.65■□□□□ 0.9
NPHP1O15259 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC20.65■□□□□ 0.9
NPHP1O15259 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP1O15259 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP1O15259 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
NPHP1O15259 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
NPHP1O15259 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
NPHP1O15259 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
NPHP1O15259 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC20.64■□□□□ 0.9
NPHP1O15259 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
NPHP1O15259 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
NPHP1O15259 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
NPHP1O15259 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP1O15259 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC20.64■□□□□ 0.89
NPHP1O15259 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC20.64■□□□□ 0.89
NPHP1O15259 AL080243.2-201ENST00000418783 582 ntBASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms