Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
UBQLN3Q9H347 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
UBQLN3Q9H347 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
UBQLN3Q9H347 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
UBQLN3Q9H347 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
UBQLN3Q9H347 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.96■■□□□ 1.11
UBQLN3Q9H347 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC21.96■■□□□ 1.11
UBQLN3Q9H347 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.96■■□□□ 1.11
UBQLN3Q9H347 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
UBQLN3Q9H347 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.95■■□□□ 1.1
UBQLN3Q9H347 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
UBQLN3Q9H347 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
UBQLN3Q9H347 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
UBQLN3Q9H347 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
UBQLN3Q9H347 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
UBQLN3Q9H347 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
UBQLN3Q9H347 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
UBQLN3Q9H347 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC21.94■■□□□ 1.1
UBQLN3Q9H347 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
UBQLN3Q9H347 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.93■■□□□ 1.1
UBQLN3Q9H347 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.93■■□□□ 1.1
UBQLN3Q9H347 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.93■■□□□ 1.1
UBQLN3Q9H347 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.93■■□□□ 1.1
UBQLN3Q9H347 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.93■■□□□ 1.1
UBQLN3Q9H347 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
UBQLN3Q9H347 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
UBQLN3Q9H347 AC093323.1-202ENST00000635031 2045 ntBASIC21.92■■□□□ 1.1
UBQLN3Q9H347 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
UBQLN3Q9H347 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC21.92■■□□□ 1.1
UBQLN3Q9H347 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.92■■□□□ 1.1
UBQLN3Q9H347 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
UBQLN3Q9H347 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
UBQLN3Q9H347 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
UBQLN3Q9H347 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
UBQLN3Q9H347 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
UBQLN3Q9H347 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
UBQLN3Q9H347 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
UBQLN3Q9H347 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
UBQLN3Q9H347 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
UBQLN3Q9H347 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
UBQLN3Q9H347 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
UBQLN3Q9H347 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.9■■□□□ 1.1
UBQLN3Q9H347 AC074183.2-201ENST00000623112 922 ntBASIC21.9■■□□□ 1.1
UBQLN3Q9H347 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
UBQLN3Q9H347 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
UBQLN3Q9H347 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
UBQLN3Q9H347 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
UBQLN3Q9H347 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
UBQLN3Q9H347 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.1
UBQLN3Q9H347 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
UBQLN3Q9H347 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
UBQLN3Q9H347 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
UBQLN3Q9H347 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
UBQLN3Q9H347 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.89■■□□□ 1.09
UBQLN3Q9H347 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
UBQLN3Q9H347 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
UBQLN3Q9H347 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
UBQLN3Q9H347 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
UBQLN3Q9H347 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC21.88■■□□□ 1.09
UBQLN3Q9H347 HYI-210ENST00000486909 905 ntTSL 5 BASIC21.88■■□□□ 1.09
UBQLN3Q9H347 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
UBQLN3Q9H347 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
UBQLN3Q9H347 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
UBQLN3Q9H347 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
UBQLN3Q9H347 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.87■■□□□ 1.09
UBQLN3Q9H347 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
UBQLN3Q9H347 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
UBQLN3Q9H347 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
UBQLN3Q9H347 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
UBQLN3Q9H347 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
UBQLN3Q9H347 AC142381.3-201ENST00000568208 1670 ntBASIC21.86■■□□□ 1.09
UBQLN3Q9H347 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.86■■□□□ 1.09
UBQLN3Q9H347 AC139795.1-202ENST00000500444 432 ntBASIC21.86■■□□□ 1.09
UBQLN3Q9H347 AC087393.1-201ENST00000582896 145 ntBASIC21.86■■□□□ 1.09
UBQLN3Q9H347 BHLHE23-202ENST00000612929 1109 ntBASIC21.86■■□□□ 1.09
UBQLN3Q9H347 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
UBQLN3Q9H347 AC096887.2-201ENST00000623443 1957 ntBASIC21.86■■□□□ 1.09
UBQLN3Q9H347 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
UBQLN3Q9H347 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
UBQLN3Q9H347 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.86■■□□□ 1.09
UBQLN3Q9H347 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
UBQLN3Q9H347 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
UBQLN3Q9H347 KRT18P10-201ENST00000388836 1287 ntBASIC21.85■■□□□ 1.09
UBQLN3Q9H347 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.85■■□□□ 1.09
UBQLN3Q9H347 RPS2P7-201ENST00000447334 885 ntBASIC21.85■■□□□ 1.09
UBQLN3Q9H347 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.85■■□□□ 1.09
UBQLN3Q9H347 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
UBQLN3Q9H347 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
UBQLN3Q9H347 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC21.84■■□□□ 1.09
UBQLN3Q9H347 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
UBQLN3Q9H347 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
UBQLN3Q9H347 AC010980.1-201ENST00000587192 1142 ntBASIC21.84■■□□□ 1.09
UBQLN3Q9H347 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
UBQLN3Q9H347 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
UBQLN3Q9H347 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.84■■□□□ 1.09
UBQLN3Q9H347 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.84■■□□□ 1.09
UBQLN3Q9H347 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.84■■□□□ 1.09
UBQLN3Q9H347 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.84■■□□□ 1.09
UBQLN3Q9H347 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.84■■□□□ 1.09
UBQLN3Q9H347 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.84■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms