Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.77■■□□□ 1.56
RNF38Q9H0F5 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC24.76■■□□□ 1.55
RNF38Q9H0F5 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
RNF38Q9H0F5 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC24.76■■□□□ 1.55
RNF38Q9H0F5 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
RNF38Q9H0F5 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC24.76■■□□□ 1.55
RNF38Q9H0F5 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC24.76■■□□□ 1.55
RNF38Q9H0F5 AC120024.1-201ENST00000562672 995 ntBASIC24.76■■□□□ 1.55
RNF38Q9H0F5 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC24.76■■□□□ 1.55
RNF38Q9H0F5 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
RNF38Q9H0F5 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC24.76■■□□□ 1.55
RNF38Q9H0F5 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC24.76■■□□□ 1.55
RNF38Q9H0F5 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
RNF38Q9H0F5 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC24.76■■□□□ 1.55
RNF38Q9H0F5 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC24.75■■□□□ 1.55
RNF38Q9H0F5 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
RNF38Q9H0F5 AC096887.2-201ENST00000623443 1957 ntBASIC24.75■■□□□ 1.55
RNF38Q9H0F5 AL592295.1-201ENST00000400984 884 ntBASIC24.75■■□□□ 1.55
RNF38Q9H0F5 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
RNF38Q9H0F5 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
RNF38Q9H0F5 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC24.74■■□□□ 1.55
RNF38Q9H0F5 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
RNF38Q9H0F5 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
RNF38Q9H0F5 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC24.74■■□□□ 1.55
RNF38Q9H0F5 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
RNF38Q9H0F5 THA1P-201ENST00000590384 1145 ntBASIC24.74■■□□□ 1.55
RNF38Q9H0F5 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC24.74■■□□□ 1.55
RNF38Q9H0F5 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC24.74■■□□□ 1.55
RNF38Q9H0F5 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC24.73■■□□□ 1.55
RNF38Q9H0F5 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
RNF38Q9H0F5 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC24.73■■□□□ 1.55
RNF38Q9H0F5 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC24.73■■□□□ 1.55
RNF38Q9H0F5 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC24.73■■□□□ 1.55
RNF38Q9H0F5 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC24.73■■□□□ 1.55
RNF38Q9H0F5 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC24.73■■□□□ 1.55
RNF38Q9H0F5 Z92544.1-202ENST00000571933 1220 ntBASIC24.73■■□□□ 1.55
RNF38Q9H0F5 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC24.73■■□□□ 1.55
RNF38Q9H0F5 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
RNF38Q9H0F5 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
RNF38Q9H0F5 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
RNF38Q9H0F5 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
RNF38Q9H0F5 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
RNF38Q9H0F5 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
RNF38Q9H0F5 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC24.72■■□□□ 1.55
RNF38Q9H0F5 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC24.72■■□□□ 1.55
RNF38Q9H0F5 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
RNF38Q9H0F5 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
RNF38Q9H0F5 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC24.71■■□□□ 1.55
RNF38Q9H0F5 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
RNF38Q9H0F5 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
RNF38Q9H0F5 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
RNF38Q9H0F5 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
RNF38Q9H0F5 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
RNF38Q9H0F5 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
RNF38Q9H0F5 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC24.7■■□□□ 1.54
RNF38Q9H0F5 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC24.69■■□□□ 1.54
RNF38Q9H0F5 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC24.69■■□□□ 1.54
RNF38Q9H0F5 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
RNF38Q9H0F5 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC24.68■■□□□ 1.54
RNF38Q9H0F5 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
RNF38Q9H0F5 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
RNF38Q9H0F5 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC24.68■■□□□ 1.54
RNF38Q9H0F5 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
RNF38Q9H0F5 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
RNF38Q9H0F5 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC24.68■■□□□ 1.54
RNF38Q9H0F5 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC24.67■■□□□ 1.54
RNF38Q9H0F5 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
RNF38Q9H0F5 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
RNF38Q9H0F5 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
RNF38Q9H0F5 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
RNF38Q9H0F5 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
RNF38Q9H0F5 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC24.67■■□□□ 1.54
RNF38Q9H0F5 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
RNF38Q9H0F5 BX664725.1-201ENST00000438252 379 ntBASIC24.66■■□□□ 1.54
RNF38Q9H0F5 CREM-229ENST00000474362 1030 ntTSL 2 BASIC24.66■■□□□ 1.54
RNF38Q9H0F5 AC137630.3-201ENST00000607245 391 ntBASIC24.66■■□□□ 1.54
RNF38Q9H0F5 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
RNF38Q9H0F5 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC24.66■■□□□ 1.54
RNF38Q9H0F5 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC24.65■■□□□ 1.54
RNF38Q9H0F5 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
RNF38Q9H0F5 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC24.65■■□□□ 1.54
RNF38Q9H0F5 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC24.65■■□□□ 1.54
RNF38Q9H0F5 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
RNF38Q9H0F5 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC24.65■■□□□ 1.54
RNF38Q9H0F5 AC010501.1-201ENST00000606270 1962 ntBASIC24.65■■□□□ 1.54
RNF38Q9H0F5 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
RNF38Q9H0F5 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
RNF38Q9H0F5 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC24.65■■□□□ 1.54
RNF38Q9H0F5 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC24.64■■□□□ 1.54
RNF38Q9H0F5 AC092803.2-201ENST00000564287 1899 ntBASIC24.64■■□□□ 1.54
RNF38Q9H0F5 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
RNF38Q9H0F5 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
RNF38Q9H0F5 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.54
RNF38Q9H0F5 MIR4787-201ENST00000607364 84 ntBASIC24.64■■□□□ 1.54
RNF38Q9H0F5 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC24.64■■□□□ 1.53
RNF38Q9H0F5 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC24.64■■□□□ 1.53
RNF38Q9H0F5 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
RNF38Q9H0F5 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
RNF38Q9H0F5 KRT125P-201ENST00000546827 989 ntBASIC24.63■■□□□ 1.53
RNF38Q9H0F5 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms