Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LINC00477Q96M19 PREB-202ENST00000406567 1910 ntTSL 5 BASIC17.71■□□□□ 0.43
LINC00477Q96M19 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LINC00477Q96M19 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LINC00477Q96M19 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC17.71■□□□□ 0.43
LINC00477Q96M19 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
LINC00477Q96M19 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
LINC00477Q96M19 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LINC00477Q96M19 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
LINC00477Q96M19 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
LINC00477Q96M19 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LINC00477Q96M19 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LINC00477Q96M19 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC17.7■□□□□ 0.42
LINC00477Q96M19 MIR7108-201ENST00000614319 87 ntBASIC17.7■□□□□ 0.42
LINC00477Q96M19 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC17.69■□□□□ 0.42
LINC00477Q96M19 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
LINC00477Q96M19 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LINC00477Q96M19 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LINC00477Q96M19 ECEL1P2-201ENST00000461596 1295 ntBASIC17.69■□□□□ 0.42
LINC00477Q96M19 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
LINC00477Q96M19 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LINC00477Q96M19 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC17.69■□□□□ 0.42
LINC00477Q96M19 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LINC00477Q96M19 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
LINC00477Q96M19 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
LINC00477Q96M19 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC17.68■□□□□ 0.42
LINC00477Q96M19 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LINC00477Q96M19 AC092296.2-201ENST00000589470 999 ntBASIC17.68■□□□□ 0.42
LINC00477Q96M19 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LINC00477Q96M19 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LINC00477Q96M19 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LINC00477Q96M19 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LINC00477Q96M19 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LINC00477Q96M19 MIR639-201ENST00000384974 98 ntBASIC17.67■□□□□ 0.42
LINC00477Q96M19 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
LINC00477Q96M19 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LINC00477Q96M19 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC17.67■□□□□ 0.42
LINC00477Q96M19 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LINC00477Q96M19 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LINC00477Q96M19 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LINC00477Q96M19 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LINC00477Q96M19 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC17.66■□□□□ 0.42
LINC00477Q96M19 RP9P-202ENST00000450133 1212 ntBASIC17.66■□□□□ 0.42
LINC00477Q96M19 THRA-202ENST00000394121 2260 ntTSL 2 BASIC17.66■□□□□ 0.42
LINC00477Q96M19 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LINC00477Q96M19 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LINC00477Q96M19 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LINC00477Q96M19 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
LINC00477Q96M19 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LINC00477Q96M19 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LINC00477Q96M19 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LINC00477Q96M19 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC17.65■□□□□ 0.42
LINC00477Q96M19 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LINC00477Q96M19 LINC01124-201ENST00000409786 2117 ntBASIC17.65■□□□□ 0.42
LINC00477Q96M19 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
LINC00477Q96M19 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC17.65■□□□□ 0.42
LINC00477Q96M19 AC022413.1-201ENST00000624602 984 ntBASIC17.65■□□□□ 0.42
LINC00477Q96M19 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LINC00477Q96M19 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
LINC00477Q96M19 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC17.65■□□□□ 0.42
LINC00477Q96M19 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LINC00477Q96M19 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LINC00477Q96M19 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
LINC00477Q96M19 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LINC00477Q96M19 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LINC00477Q96M19 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
LINC00477Q96M19 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LINC00477Q96M19 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC17.64■□□□□ 0.41
LINC00477Q96M19 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC17.64■□□□□ 0.41
LINC00477Q96M19 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC17.64■□□□□ 0.41
LINC00477Q96M19 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LINC00477Q96M19 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LINC00477Q96M19 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LINC00477Q96M19 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LINC00477Q96M19 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LINC00477Q96M19 AC141586.4-201ENST00000624558 1573 ntBASIC17.63■□□□□ 0.41
LINC00477Q96M19 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC17.63■□□□□ 0.41
LINC00477Q96M19 KRT18P10-201ENST00000388836 1287 ntBASIC17.63■□□□□ 0.41
LINC00477Q96M19 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC17.63■□□□□ 0.41
LINC00477Q96M19 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LINC00477Q96M19 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LINC00477Q96M19 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LINC00477Q96M19 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LINC00477Q96M19 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LINC00477Q96M19 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LINC00477Q96M19 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC17.62■□□□□ 0.41
LINC00477Q96M19 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LINC00477Q96M19 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LINC00477Q96M19 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC17.62■□□□□ 0.41
LINC00477Q96M19 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LINC00477Q96M19 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LINC00477Q96M19 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LINC00477Q96M19 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC17.62■□□□□ 0.41
LINC00477Q96M19 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LINC00477Q96M19 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
LINC00477Q96M19 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
LINC00477Q96M19 LINC00543-201ENST00000567234 1845 ntBASIC17.61■□□□□ 0.41
LINC00477Q96M19 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LINC00477Q96M19 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LINC00477Q96M19 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms