Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC28AQ8IWP9 AC137767.1-201ENST00000602918 1920 ntBASIC19.71■□□□□ 0.75
CCDC28AQ8IWP9 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC19.71■□□□□ 0.75
CCDC28AQ8IWP9 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC28AQ8IWP9 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC19.71■□□□□ 0.75
CCDC28AQ8IWP9 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC28AQ8IWP9 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC28AQ8IWP9 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC28AQ8IWP9 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
CCDC28AQ8IWP9 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC28AQ8IWP9 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC28AQ8IWP9 AC007375.3-201ENST00000600936 2314 ntBASIC19.7■□□□□ 0.74
CCDC28AQ8IWP9 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC28AQ8IWP9 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC19.7■□□□□ 0.74
CCDC28AQ8IWP9 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC28AQ8IWP9 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC28AQ8IWP9 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC28AQ8IWP9 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC28AQ8IWP9 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC28AQ8IWP9 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC19.69■□□□□ 0.74
CCDC28AQ8IWP9 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC28AQ8IWP9 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC28AQ8IWP9 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC28AQ8IWP9 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC28AQ8IWP9 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC28AQ8IWP9 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC28AQ8IWP9 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
CCDC28AQ8IWP9 RARRES2P7-201ENST00000567349 469 ntBASIC19.68■□□□□ 0.74
CCDC28AQ8IWP9 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC28AQ8IWP9 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28AQ8IWP9 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28AQ8IWP9 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28AQ8IWP9 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28AQ8IWP9 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CCDC28AQ8IWP9 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28AQ8IWP9 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CCDC28AQ8IWP9 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28AQ8IWP9 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC28AQ8IWP9 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28AQ8IWP9 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28AQ8IWP9 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC28AQ8IWP9 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.66■□□□□ 0.74
CCDC28AQ8IWP9 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC28AQ8IWP9 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC28AQ8IWP9 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC28AQ8IWP9 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
CCDC28AQ8IWP9 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC28AQ8IWP9 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC28AQ8IWP9 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC28AQ8IWP9 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC28AQ8IWP9 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28AQ8IWP9 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28AQ8IWP9 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28AQ8IWP9 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28AQ8IWP9 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28AQ8IWP9 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28AQ8IWP9 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC28AQ8IWP9 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC19.65■□□□□ 0.74
CCDC28AQ8IWP9 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28AQ8IWP9 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28AQ8IWP9 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC28AQ8IWP9 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28AQ8IWP9 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28AQ8IWP9 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
CCDC28AQ8IWP9 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28AQ8IWP9 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC28AQ8IWP9 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC28AQ8IWP9 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC28AQ8IWP9 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
CCDC28AQ8IWP9 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CCDC28AQ8IWP9 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC28AQ8IWP9 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC28AQ8IWP9 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC19.64■□□□□ 0.73
CCDC28AQ8IWP9 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC28AQ8IWP9 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC28AQ8IWP9 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC28AQ8IWP9 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CCDC28AQ8IWP9 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC28AQ8IWP9 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC28AQ8IWP9 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC28AQ8IWP9 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC28AQ8IWP9 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC28AQ8IWP9 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC28AQ8IWP9 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CCDC28AQ8IWP9 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC28AQ8IWP9 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CCDC28AQ8IWP9 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC28AQ8IWP9 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CCDC28AQ8IWP9 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC28AQ8IWP9 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC28AQ8IWP9 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
CCDC28AQ8IWP9 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC28AQ8IWP9 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC28AQ8IWP9 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CCDC28AQ8IWP9 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.61■□□□□ 0.73
CCDC28AQ8IWP9 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC28AQ8IWP9 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC28AQ8IWP9 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC28AQ8IWP9 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC28AQ8IWP9 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms