Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC32.31■■■□□ 2.76
USP54Q70EL1 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
USP54Q70EL1 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
USP54Q70EL1 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC32.31■■■□□ 2.76
USP54Q70EL1 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
USP54Q70EL1 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC32.3■■■□□ 2.76
USP54Q70EL1 AC092028.1-203ENST00000608262 953 ntBASIC32.3■■■□□ 2.76
USP54Q70EL1 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC32.29■■■□□ 2.76
USP54Q70EL1 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC32.29■■■□□ 2.76
USP54Q70EL1 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC32.28■■■□□ 2.76
USP54Q70EL1 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
USP54Q70EL1 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
USP54Q70EL1 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
USP54Q70EL1 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC32.27■■■□□ 2.76
USP54Q70EL1 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC32.27■■■□□ 2.76
USP54Q70EL1 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC32.27■■■□□ 2.76
USP54Q70EL1 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC32.27■■■□□ 2.76
USP54Q70EL1 SNAI3-AS1-204ENST00000567997 2048 ntBASIC32.26■■■□□ 2.76
USP54Q70EL1 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
USP54Q70EL1 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC32.26■■■□□ 2.76
USP54Q70EL1 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
USP54Q70EL1 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC32.26■■■□□ 2.75
USP54Q70EL1 AL117332.1-201ENST00000622628 974 ntBASIC32.26■■■□□ 2.75
USP54Q70EL1 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC32.25■■■□□ 2.75
USP54Q70EL1 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC32.25■■■□□ 2.75
USP54Q70EL1 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC32.25■■■□□ 2.75
USP54Q70EL1 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
USP54Q70EL1 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC32.24■■■□□ 2.75
USP54Q70EL1 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
USP54Q70EL1 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
USP54Q70EL1 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
USP54Q70EL1 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC32.24■■■□□ 2.75
USP54Q70EL1 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
USP54Q70EL1 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
USP54Q70EL1 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC32.22■■■□□ 2.75
USP54Q70EL1 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC32.22■■■□□ 2.75
USP54Q70EL1 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC32.22■■■□□ 2.75
USP54Q70EL1 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC32.22■■■□□ 2.75
USP54Q70EL1 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC32.22■■■□□ 2.75
USP54Q70EL1 AF131216.4-201ENST00000638924 1588 ntBASIC32.21■■■□□ 2.75
USP54Q70EL1 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC32.2■■■□□ 2.75
USP54Q70EL1 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
USP54Q70EL1 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
USP54Q70EL1 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC32.2■■■□□ 2.75
USP54Q70EL1 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
USP54Q70EL1 TSPY9P-201ENST00000440215 945 ntBASIC32.19■■■□□ 2.74
USP54Q70EL1 TSPY11P-201ENST00000442607 1045 ntBASIC32.19■■■□□ 2.74
USP54Q70EL1 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC32.19■■■□□ 2.74
USP54Q70EL1 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC32.19■■■□□ 2.74
USP54Q70EL1 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC32.18■■■□□ 2.74
USP54Q70EL1 AL512631.2-201ENST00000604634 923 ntBASIC32.18■■■□□ 2.74
USP54Q70EL1 GAK-223ENST00000628912 497 ntTSL 5 BASIC32.18■■■□□ 2.74
USP54Q70EL1 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC32.18■■■□□ 2.74
USP54Q70EL1 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC32.18■■■□□ 2.74
USP54Q70EL1 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC32.18■■■□□ 2.74
USP54Q70EL1 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
USP54Q70EL1 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
USP54Q70EL1 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
USP54Q70EL1 AC008406.3-201ENST00000620001 1374 ntBASIC32.17■■■□□ 2.74
USP54Q70EL1 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
USP54Q70EL1 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
USP54Q70EL1 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
USP54Q70EL1 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC32.16■■■□□ 2.74
USP54Q70EL1 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC32.16■■■□□ 2.74
USP54Q70EL1 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
USP54Q70EL1 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
USP54Q70EL1 TRIR-202ENST00000588213 841 ntTSL 3 BASIC32.15■■■□□ 2.74
USP54Q70EL1 MIR6724-1-201ENST00000616420 92 ntBASIC32.15■■■□□ 2.74
USP54Q70EL1 MIR6724-2-201ENST00000616483 92 ntBASIC32.15■■■□□ 2.74
USP54Q70EL1 MIR6724-4-201ENST00000617390 92 ntBASIC32.15■■■□□ 2.74
USP54Q70EL1 MIR6724-3-201ENST00000622482 92 ntBASIC32.15■■■□□ 2.74
USP54Q70EL1 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
USP54Q70EL1 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
USP54Q70EL1 QDPR-206ENST00000508623 601 ntTSL 3 BASIC32.15■■■□□ 2.74
USP54Q70EL1 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC32.14■■■□□ 2.74
USP54Q70EL1 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC32.14■■■□□ 2.74
USP54Q70EL1 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC32.14■■■□□ 2.74
USP54Q70EL1 MIR638-201ENST00000385237 100 ntBASIC32.14■■■□□ 2.74
USP54Q70EL1 MTDHP2-201ENST00000601468 714 ntBASIC32.14■■■□□ 2.74
USP54Q70EL1 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC32.14■■■□□ 2.74
USP54Q70EL1 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC32.13■■■□□ 2.73
USP54Q70EL1 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC32.13■■■□□ 2.73
USP54Q70EL1 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC32.13■■■□□ 2.73
USP54Q70EL1 PEMT-206ENST00000435340 960 ntTSL 5 BASIC32.12■■■□□ 2.73
USP54Q70EL1 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
USP54Q70EL1 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC32.11■■■□□ 2.73
USP54Q70EL1 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
USP54Q70EL1 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC32.11■■■□□ 2.73
USP54Q70EL1 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC32.11■■■□□ 2.73
USP54Q70EL1 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC32.11■■■□□ 2.73
USP54Q70EL1 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
USP54Q70EL1 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC32.11■■■□□ 2.73
USP54Q70EL1 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
USP54Q70EL1 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
USP54Q70EL1 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
USP54Q70EL1 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC32.1■■■□□ 2.73
USP54Q70EL1 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
USP54Q70EL1 SSSCA1-AS1-201ENST00000567594 614 ntBASIC32.1■■■□□ 2.73
USP54Q70EL1 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC32.1■■■□□ 2.73
USP54Q70EL1 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC32.1■■■□□ 2.73
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms