Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC25.72■■□□□ 1.71
CHD9Q3L8U1 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
CHD9Q3L8U1 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC25.72■■□□□ 1.71
CHD9Q3L8U1 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC25.72■■□□□ 1.71
CHD9Q3L8U1 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
CHD9Q3L8U1 EXOG-217ENST00000630638 197 ntTSL 5 BASIC25.72■■□□□ 1.71
CHD9Q3L8U1 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC25.71■■□□□ 1.71
CHD9Q3L8U1 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC25.71■■□□□ 1.71
CHD9Q3L8U1 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC25.71■■□□□ 1.71
CHD9Q3L8U1 AL356740.2-201ENST00000601559 647 ntBASIC25.7■■□□□ 1.71
CHD9Q3L8U1 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CHD9Q3L8U1 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC25.7■■□□□ 1.7
CHD9Q3L8U1 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC25.69■■□□□ 1.7
CHD9Q3L8U1 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC25.69■■□□□ 1.7
CHD9Q3L8U1 MTDHP2-201ENST00000601468 714 ntBASIC25.69■■□□□ 1.7
CHD9Q3L8U1 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CHD9Q3L8U1 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC25.69■■□□□ 1.7
CHD9Q3L8U1 AC087623.3-201ENST00000607047 1098 ntBASIC25.69■■□□□ 1.7
CHD9Q3L8U1 PBX2P1-201ENST00000493219 1291 ntBASIC25.68■■□□□ 1.7
CHD9Q3L8U1 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC25.68■■□□□ 1.7
CHD9Q3L8U1 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CHD9Q3L8U1 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
CHD9Q3L8U1 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CHD9Q3L8U1 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CHD9Q3L8U1 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC25.67■■□□□ 1.7
CHD9Q3L8U1 AC011551.1-201ENST00000614101 683 ntBASIC25.67■■□□□ 1.7
CHD9Q3L8U1 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CHD9Q3L8U1 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CHD9Q3L8U1 KRT18P10-201ENST00000388836 1287 ntBASIC25.66■■□□□ 1.7
CHD9Q3L8U1 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC25.66■■□□□ 1.7
CHD9Q3L8U1 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CHD9Q3L8U1 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC25.66■■□□□ 1.7
CHD9Q3L8U1 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
CHD9Q3L8U1 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC25.65■■□□□ 1.7
CHD9Q3L8U1 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
CHD9Q3L8U1 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
CHD9Q3L8U1 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC25.65■■□□□ 1.7
CHD9Q3L8U1 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC25.65■■□□□ 1.7
CHD9Q3L8U1 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC25.65■■□□□ 1.7
CHD9Q3L8U1 AF131216.4-201ENST00000638924 1588 ntBASIC25.65■■□□□ 1.7
CHD9Q3L8U1 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CHD9Q3L8U1 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC25.65■■□□□ 1.7
CHD9Q3L8U1 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
CHD9Q3L8U1 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
CHD9Q3L8U1 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CHD9Q3L8U1 MIR6821-201ENST00000617625 74 ntBASIC25.63■■□□□ 1.69
CHD9Q3L8U1 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CHD9Q3L8U1 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC25.63■■□□□ 1.69
CHD9Q3L8U1 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC25.63■■□□□ 1.69
CHD9Q3L8U1 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CHD9Q3L8U1 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC25.63■■□□□ 1.69
CHD9Q3L8U1 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CHD9Q3L8U1 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CHD9Q3L8U1 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CHD9Q3L8U1 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC25.62■■□□□ 1.69
CHD9Q3L8U1 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC25.62■■□□□ 1.69
CHD9Q3L8U1 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC25.62■■□□□ 1.69
CHD9Q3L8U1 TFPT-201ENST00000391757 774 ntTSL 5 BASIC25.62■■□□□ 1.69
CHD9Q3L8U1 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
CHD9Q3L8U1 ANKRD20A6P-201ENST00000618763 204 ntBASIC25.62■■□□□ 1.69
CHD9Q3L8U1 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CHD9Q3L8U1 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CHD9Q3L8U1 CD72-202ENST00000378430 585 ntTSL 3 BASIC25.61■■□□□ 1.69
CHD9Q3L8U1 AK3-203ENST00000447596 705 ntTSL 2 BASIC25.61■■□□□ 1.69
CHD9Q3L8U1 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CHD9Q3L8U1 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CHD9Q3L8U1 AL355001.2-201ENST00000620617 1191 ntBASIC25.61■■□□□ 1.69
CHD9Q3L8U1 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CHD9Q3L8U1 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC25.61■■□□□ 1.69
CHD9Q3L8U1 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC25.61■■□□□ 1.69
CHD9Q3L8U1 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
CHD9Q3L8U1 AC097381.1-201ENST00000429019 1296 ntBASIC25.6■■□□□ 1.69
CHD9Q3L8U1 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC25.6■■□□□ 1.69
CHD9Q3L8U1 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CHD9Q3L8U1 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC25.59■■□□□ 1.69
CHD9Q3L8U1 AL162430.1-201ENST00000480705 870 ntBASIC25.59■■□□□ 1.69
CHD9Q3L8U1 UNC93B3-201ENST00000308076 687 ntBASIC25.59■■□□□ 1.69
CHD9Q3L8U1 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CHD9Q3L8U1 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC25.59■■□□□ 1.69
CHD9Q3L8U1 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
CHD9Q3L8U1 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CHD9Q3L8U1 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CHD9Q3L8U1 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC25.58■■□□□ 1.69
CHD9Q3L8U1 SNAI3-AS1-204ENST00000567997 2048 ntBASIC25.58■■□□□ 1.69
CHD9Q3L8U1 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CHD9Q3L8U1 AC024257.2-201ENST00000549699 147 ntBASIC25.58■■□□□ 1.69
CHD9Q3L8U1 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
CHD9Q3L8U1 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CHD9Q3L8U1 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC25.57■■□□□ 1.68
CHD9Q3L8U1 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CHD9Q3L8U1 AC105265.2-201ENST00000467189 838 ntBASIC25.57■■□□□ 1.68
CHD9Q3L8U1 AL136967.2-201ENST00000623968 743 ntBASIC25.57■■□□□ 1.68
CHD9Q3L8U1 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC25.56■■□□□ 1.68
CHD9Q3L8U1 PLD4-205ENST00000553861 667 ntTSL 2 BASIC25.56■■□□□ 1.68
CHD9Q3L8U1 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC25.56■■□□□ 1.68
CHD9Q3L8U1 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CHD9Q3L8U1 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CHD9Q3L8U1 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CHD9Q3L8U1 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC25.56■■□□□ 1.68
CHD9Q3L8U1 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms