Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLRN1P58418 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLRN1P58418 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLRN1P58418 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.14■□□□□ 0.97
CLRN1P58418 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLRN1P58418 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLRN1P58418 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLRN1P58418 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC21.13■□□□□ 0.97
CLRN1P58418 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.13■□□□□ 0.97
CLRN1P58418 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLRN1P58418 AC022211.4-201ENST00000625094 2161 ntBASIC21.13■□□□□ 0.97
CLRN1P58418 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLRN1P58418 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLRN1P58418 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CLRN1P58418 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLRN1P58418 AC142381.3-201ENST00000568208 1670 ntBASIC21.12■□□□□ 0.97
CLRN1P58418 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
CLRN1P58418 AL592293.1-201ENST00000502889 1188 ntBASIC21.12■□□□□ 0.97
CLRN1P58418 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLRN1P58418 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLRN1P58418 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLRN1P58418 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CLRN1P58418 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLRN1P58418 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
CLRN1P58418 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC21.11■□□□□ 0.97
CLRN1P58418 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.11■□□□□ 0.97
CLRN1P58418 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
CLRN1P58418 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLRN1P58418 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLRN1P58418 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLRN1P58418 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.1■□□□□ 0.97
CLRN1P58418 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CLRN1P58418 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLRN1P58418 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLRN1P58418 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLRN1P58418 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLRN1P58418 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC21.09■□□□□ 0.97
CLRN1P58418 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CLRN1P58418 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
CLRN1P58418 AC018755.3-202ENST00000596210 929 ntBASIC21.09■□□□□ 0.97
CLRN1P58418 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLRN1P58418 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CLRN1P58418 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLRN1P58418 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.09■□□□□ 0.97
CLRN1P58418 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
CLRN1P58418 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLRN1P58418 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLRN1P58418 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLRN1P58418 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLRN1P58418 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.96
CLRN1P58418 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CLRN1P58418 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CLRN1P58418 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.07■□□□□ 0.96
CLRN1P58418 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CLRN1P58418 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLRN1P58418 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLRN1P58418 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CLRN1P58418 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CLRN1P58418 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLRN1P58418 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLRN1P58418 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLRN1P58418 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLRN1P58418 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLRN1P58418 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLRN1P58418 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.06■□□□□ 0.96
CLRN1P58418 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CLRN1P58418 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
CLRN1P58418 U85056.1-201ENST00000616429 682 ntBASIC21.06■□□□□ 0.96
CLRN1P58418 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CLRN1P58418 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CLRN1P58418 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLRN1P58418 SLC6A10P-202ENST00000431994 2058 ntBASIC21.06■□□□□ 0.96
CLRN1P58418 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLRN1P58418 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLRN1P58418 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLRN1P58418 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.06■□□□□ 0.96
CLRN1P58418 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLRN1P58418 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.05■□□□□ 0.96
CLRN1P58418 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CLRN1P58418 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CLRN1P58418 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLRN1P58418 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLRN1P58418 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLRN1P58418 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.05■□□□□ 0.96
CLRN1P58418 ABHD17AP5-201ENST00000580133 923 ntBASIC21.05■□□□□ 0.96
CLRN1P58418 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC21.04■□□□□ 0.96
CLRN1P58418 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.04■□□□□ 0.96
CLRN1P58418 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.04■□□□□ 0.96
CLRN1P58418 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CLRN1P58418 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CLRN1P58418 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.04■□□□□ 0.96
CLRN1P58418 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLRN1P58418 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLRN1P58418 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLRN1P58418 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLRN1P58418 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLRN1P58418 AC138932.3-201ENST00000567634 1902 ntBASIC21.03■□□□□ 0.96
CLRN1P58418 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CLRN1P58418 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
CLRN1P58418 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms