Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC31.27■■■□□ 2.6
RIPK4P57078 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
RIPK4P57078 MIR4508-201ENST00000584178 70 ntBASIC31.27■■■□□ 2.6
RIPK4P57078 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC31.26■■■□□ 2.59
RIPK4P57078 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC31.26■■■□□ 2.59
RIPK4P57078 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
RIPK4P57078 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
RIPK4P57078 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
RIPK4P57078 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
RIPK4P57078 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
RIPK4P57078 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
RIPK4P57078 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
RIPK4P57078 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC31.25■■■□□ 2.59
RIPK4P57078 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
RIPK4P57078 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
RIPK4P57078 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
RIPK4P57078 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC31.24■■■□□ 2.59
RIPK4P57078 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
RIPK4P57078 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
RIPK4P57078 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC31.24■■■□□ 2.59
RIPK4P57078 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
RIPK4P57078 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC31.24■■■□□ 2.59
RIPK4P57078 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
RIPK4P57078 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
RIPK4P57078 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
RIPK4P57078 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC31.23■■■□□ 2.59
RIPK4P57078 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC31.22■■■□□ 2.59
RIPK4P57078 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC31.22■■■□□ 2.59
RIPK4P57078 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC31.22■■■□□ 2.59
RIPK4P57078 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
RIPK4P57078 YBX1P4-201ENST00000392794 808 ntBASIC31.21■■■□□ 2.59
RIPK4P57078 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
RIPK4P57078 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC31.21■■■□□ 2.59
RIPK4P57078 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
RIPK4P57078 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
RIPK4P57078 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC31.19■■■□□ 2.58
RIPK4P57078 CREM-210ENST00000374721 2020 ntTSL 5 BASIC31.19■■■□□ 2.58
RIPK4P57078 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
RIPK4P57078 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
RIPK4P57078 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
RIPK4P57078 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC31.18■■■□□ 2.58
RIPK4P57078 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
RIPK4P57078 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC31.18■■■□□ 2.58
RIPK4P57078 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC31.18■■■□□ 2.58
RIPK4P57078 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
RIPK4P57078 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC31.18■■■□□ 2.58
RIPK4P57078 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
RIPK4P57078 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC31.18■■■□□ 2.58
RIPK4P57078 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC31.18■■■□□ 2.58
RIPK4P57078 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC31.17■■■□□ 2.58
RIPK4P57078 AC103724.3-201ENST00000564481 992 ntBASIC31.17■■■□□ 2.58
RIPK4P57078 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
RIPK4P57078 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
RIPK4P57078 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
RIPK4P57078 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC31.16■■■□□ 2.58
RIPK4P57078 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC31.15■■■□□ 2.58
RIPK4P57078 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
RIPK4P57078 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC31.14■■■□□ 2.58
RIPK4P57078 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.58
RIPK4P57078 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
RIPK4P57078 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
RIPK4P57078 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC31.14■■■□□ 2.58
RIPK4P57078 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC31.14■■■□□ 2.58
RIPK4P57078 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC31.14■■■□□ 2.58
RIPK4P57078 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC31.13■■■□□ 2.57
RIPK4P57078 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC31.13■■■□□ 2.57
RIPK4P57078 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC31.13■■■□□ 2.57
RIPK4P57078 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
RIPK4P57078 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC31.13■■■□□ 2.57
RIPK4P57078 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
RIPK4P57078 FOXO3B-201ENST00000395675 1928 ntBASIC31.12■■■□□ 2.57
RIPK4P57078 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
RIPK4P57078 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC31.12■■■□□ 2.57
RIPK4P57078 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC31.12■■■□□ 2.57
RIPK4P57078 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC31.12■■■□□ 2.57
RIPK4P57078 AC022616.5-201ENST00000518796 181 ntBASIC31.12■■■□□ 2.57
RIPK4P57078 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC31.12■■■□□ 2.57
RIPK4P57078 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
RIPK4P57078 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC31.12■■■□□ 2.57
RIPK4P57078 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
RIPK4P57078 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
RIPK4P57078 AL592295.1-201ENST00000400984 884 ntBASIC31.11■■■□□ 2.57
RIPK4P57078 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC31.11■■■□□ 2.57
RIPK4P57078 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC31.11■■■□□ 2.57
RIPK4P57078 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
RIPK4P57078 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
RIPK4P57078 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
RIPK4P57078 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
RIPK4P57078 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC31.1■■■□□ 2.57
RIPK4P57078 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC31.09■■■□□ 2.57
RIPK4P57078 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC31.09■■■□□ 2.57
RIPK4P57078 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC31.09■■■□□ 2.57
RIPK4P57078 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
RIPK4P57078 AL451085.2-201ENST00000605085 799 ntBASIC31.09■■■□□ 2.57
RIPK4P57078 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC31.09■■■□□ 2.57
RIPK4P57078 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
RIPK4P57078 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC31.08■■■□□ 2.57
RIPK4P57078 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC31.08■■■□□ 2.57
RIPK4P57078 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
RIPK4P57078 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms