Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PDLIM4P50479 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.11■□□□□ 0.81
PDLIM4P50479 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PDLIM4P50479 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
PDLIM4P50479 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC20.1■□□□□ 0.81
PDLIM4P50479 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
PDLIM4P50479 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
PDLIM4P50479 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PDLIM4P50479 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PDLIM4P50479 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.1■□□□□ 0.81
PDLIM4P50479 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PDLIM4P50479 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
PDLIM4P50479 MIR4787-201ENST00000607364 84 ntBASIC20.1■□□□□ 0.81
PDLIM4P50479 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
PDLIM4P50479 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PDLIM4P50479 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
PDLIM4P50479 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
PDLIM4P50479 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
PDLIM4P50479 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
PDLIM4P50479 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.09■□□□□ 0.81
PDLIM4P50479 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
PDLIM4P50479 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20.09■□□□□ 0.81
PDLIM4P50479 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PDLIM4P50479 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PDLIM4P50479 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
PDLIM4P50479 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PDLIM4P50479 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.08■□□□□ 0.81
PDLIM4P50479 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
PDLIM4P50479 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
PDLIM4P50479 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.08■□□□□ 0.81
PDLIM4P50479 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
PDLIM4P50479 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
PDLIM4P50479 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
PDLIM4P50479 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
PDLIM4P50479 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PDLIM4P50479 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC20.07■□□□□ 0.8
PDLIM4P50479 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.07■□□□□ 0.8
PDLIM4P50479 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
PDLIM4P50479 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PDLIM4P50479 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PDLIM4P50479 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PDLIM4P50479 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PDLIM4P50479 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC20.06■□□□□ 0.8
PDLIM4P50479 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PDLIM4P50479 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PDLIM4P50479 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
PDLIM4P50479 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.06■□□□□ 0.8
PDLIM4P50479 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.06■□□□□ 0.8
PDLIM4P50479 AC120024.1-201ENST00000562672 995 ntBASIC20.06■□□□□ 0.8
PDLIM4P50479 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.06■□□□□ 0.8
PDLIM4P50479 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PDLIM4P50479 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.06■□□□□ 0.8
PDLIM4P50479 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PDLIM4P50479 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.06■□□□□ 0.8
PDLIM4P50479 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PDLIM4P50479 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.05■□□□□ 0.8
PDLIM4P50479 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PDLIM4P50479 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.05■□□□□ 0.8
PDLIM4P50479 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
PDLIM4P50479 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PDLIM4P50479 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
PDLIM4P50479 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
PDLIM4P50479 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
PDLIM4P50479 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.04■□□□□ 0.8
PDLIM4P50479 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PDLIM4P50479 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PDLIM4P50479 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.04■□□□□ 0.8
PDLIM4P50479 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.04■□□□□ 0.8
PDLIM4P50479 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PDLIM4P50479 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
PDLIM4P50479 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.04■□□□□ 0.8
PDLIM4P50479 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.04■□□□□ 0.8
PDLIM4P50479 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PDLIM4P50479 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PDLIM4P50479 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
PDLIM4P50479 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
PDLIM4P50479 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PDLIM4P50479 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
PDLIM4P50479 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.03■□□□□ 0.8
PDLIM4P50479 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.03■□□□□ 0.8
PDLIM4P50479 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC20.03■□□□□ 0.8
PDLIM4P50479 AC137630.3-201ENST00000607245 391 ntBASIC20.03■□□□□ 0.8
PDLIM4P50479 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PDLIM4P50479 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PDLIM4P50479 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PDLIM4P50479 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
PDLIM4P50479 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PDLIM4P50479 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
PDLIM4P50479 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.02■□□□□ 0.8
PDLIM4P50479 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PDLIM4P50479 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.02■□□□□ 0.8
PDLIM4P50479 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PDLIM4P50479 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PDLIM4P50479 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
PDLIM4P50479 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PDLIM4P50479 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC20.01■□□□□ 0.79
PDLIM4P50479 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
PDLIM4P50479 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC20.01■□□□□ 0.79
PDLIM4P50479 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PDLIM4P50479 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms