Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL8A1P27658 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL8A1P27658 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.91■□□□□ 0.94
COL8A1P27658 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.91■□□□□ 0.94
COL8A1P27658 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
COL8A1P27658 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.91■□□□□ 0.94
COL8A1P27658 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL8A1P27658 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL8A1P27658 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL8A1P27658 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL8A1P27658 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
COL8A1P27658 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.9■□□□□ 0.94
COL8A1P27658 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.9■□□□□ 0.94
COL8A1P27658 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL8A1P27658 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.9■□□□□ 0.94
COL8A1P27658 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL8A1P27658 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL8A1P27658 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
COL8A1P27658 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC20.89■□□□□ 0.94
COL8A1P27658 KRT18P10-201ENST00000388836 1287 ntBASIC20.89■□□□□ 0.93
COL8A1P27658 AL162430.1-201ENST00000480705 870 ntBASIC20.89■□□□□ 0.93
COL8A1P27658 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL8A1P27658 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL8A1P27658 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL8A1P27658 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL8A1P27658 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL8A1P27658 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL8A1P27658 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL8A1P27658 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL8A1P27658 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL8A1P27658 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.88■□□□□ 0.93
COL8A1P27658 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.88■□□□□ 0.93
COL8A1P27658 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL8A1P27658 AC087623.3-201ENST00000607047 1098 ntBASIC20.88■□□□□ 0.93
COL8A1P27658 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.88■□□□□ 0.93
COL8A1P27658 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL8A1P27658 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL8A1P27658 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
COL8A1P27658 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL8A1P27658 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL8A1P27658 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC20.87■□□□□ 0.93
COL8A1P27658 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
COL8A1P27658 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL8A1P27658 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL8A1P27658 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL8A1P27658 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.87■□□□□ 0.93
COL8A1P27658 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.87■□□□□ 0.93
COL8A1P27658 MIR6821-201ENST00000617625 74 ntBASIC20.87■□□□□ 0.93
COL8A1P27658 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL8A1P27658 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
COL8A1P27658 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL8A1P27658 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL8A1P27658 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.87■□□□□ 0.93
COL8A1P27658 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
COL8A1P27658 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.86■□□□□ 0.93
COL8A1P27658 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
COL8A1P27658 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
COL8A1P27658 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.86■□□□□ 0.93
COL8A1P27658 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.85■□□□□ 0.93
COL8A1P27658 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL8A1P27658 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL8A1P27658 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.84■□□□□ 0.93
COL8A1P27658 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
COL8A1P27658 AC024257.2-201ENST00000549699 147 ntBASIC20.84■□□□□ 0.93
COL8A1P27658 AL355001.2-201ENST00000620617 1191 ntBASIC20.84■□□□□ 0.93
COL8A1P27658 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
COL8A1P27658 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL8A1P27658 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
COL8A1P27658 ABCB10P1-201ENST00000614297 2181 ntBASIC20.83■□□□□ 0.92
COL8A1P27658 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL8A1P27658 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
COL8A1P27658 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL8A1P27658 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL8A1P27658 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.82■□□□□ 0.92
COL8A1P27658 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL8A1P27658 AC090192.1-201ENST00000517740 490 ntBASIC20.82■□□□□ 0.92
COL8A1P27658 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.82■□□□□ 0.92
COL8A1P27658 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL8A1P27658 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL8A1P27658 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL8A1P27658 EDA-201ENST00000338901 1233 ntBASIC20.81■□□□□ 0.92
COL8A1P27658 AC097381.1-201ENST00000429019 1296 ntBASIC20.81■□□□□ 0.92
COL8A1P27658 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.81■□□□□ 0.92
COL8A1P27658 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL8A1P27658 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
COL8A1P27658 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.8■□□□□ 0.92
COL8A1P27658 AL136967.2-201ENST00000623968 743 ntBASIC20.8■□□□□ 0.92
COL8A1P27658 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
COL8A1P27658 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL8A1P27658 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL8A1P27658 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.79■□□□□ 0.92
COL8A1P27658 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL8A1P27658 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.79■□□□□ 0.92
COL8A1P27658 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.79■□□□□ 0.92
COL8A1P27658 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL8A1P27658 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL8A1P27658 AL139393.2-201ENST00000608721 2025 ntBASIC20.78■□□□□ 0.92
COL8A1P27658 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL8A1P27658 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL8A1P27658 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms