Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MIR4787-201ENST00000607364 84 ntBASIC20.06■□□□□ 0.8
USF1P22415 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USF1P22415 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.06■□□□□ 0.8
USF1P22415 AC135731.1-201ENST00000569415 2548 ntBASIC20.06■□□□□ 0.8
USF1P22415 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USF1P22415 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
USF1P22415 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
USF1P22415 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USF1P22415 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USF1P22415 KRT18P24-201ENST00000344739 1156 ntBASIC20.05■□□□□ 0.8
USF1P22415 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
USF1P22415 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
USF1P22415 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.05■□□□□ 0.8
USF1P22415 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
USF1P22415 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USF1P22415 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USF1P22415 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.05■□□□□ 0.8
USF1P22415 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USF1P22415 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
USF1P22415 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USF1P22415 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USF1P22415 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USF1P22415 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USF1P22415 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.04■□□□□ 0.8
USF1P22415 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USF1P22415 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.03■□□□□ 0.8
USF1P22415 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USF1P22415 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USF1P22415 AC008406.3-201ENST00000620001 1374 ntBASIC20.03■□□□□ 0.8
USF1P22415 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
USF1P22415 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USF1P22415 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.02■□□□□ 0.8
USF1P22415 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.02■□□□□ 0.8
USF1P22415 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
USF1P22415 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USF1P22415 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USF1P22415 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USF1P22415 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
USF1P22415 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.02■□□□□ 0.8
USF1P22415 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USF1P22415 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USF1P22415 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
USF1P22415 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
USF1P22415 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.01■□□□□ 0.79
USF1P22415 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USF1P22415 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC20■□□□□ 0.79
USF1P22415 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USF1P22415 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USF1P22415 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USF1P22415 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20■□□□□ 0.79
USF1P22415 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20■□□□□ 0.79
USF1P22415 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20■□□□□ 0.79
USF1P22415 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USF1P22415 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USF1P22415 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC20■□□□□ 0.79
USF1P22415 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC19.99■□□□□ 0.79
USF1P22415 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC19.99■□□□□ 0.79
USF1P22415 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC19.99■□□□□ 0.79
USF1P22415 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
USF1P22415 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC19.99■□□□□ 0.79
USF1P22415 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
USF1P22415 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC19.98■□□□□ 0.79
USF1P22415 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USF1P22415 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC19.98■□□□□ 0.79
USF1P22415 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
USF1P22415 AC142472.1-201ENST00000612013 1741 ntBASIC19.98■□□□□ 0.79
USF1P22415 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USF1P22415 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USF1P22415 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USF1P22415 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USF1P22415 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USF1P22415 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
USF1P22415 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USF1P22415 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC19.97■□□□□ 0.79
USF1P22415 KRT16P3-201ENST00000439127 1283 ntBASIC19.97■□□□□ 0.79
USF1P22415 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC19.97■□□□□ 0.79
USF1P22415 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
USF1P22415 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC19.97■□□□□ 0.79
USF1P22415 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USF1P22415 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USF1P22415 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USF1P22415 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USF1P22415 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USF1P22415 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC19.96■□□□□ 0.79
USF1P22415 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
USF1P22415 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC19.96■□□□□ 0.79
USF1P22415 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC19.96■□□□□ 0.79
USF1P22415 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
USF1P22415 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USF1P22415 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.96■□□□□ 0.79
USF1P22415 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC19.96■□□□□ 0.79
USF1P22415 AC120024.1-201ENST00000562672 995 ntBASIC19.96■□□□□ 0.79
USF1P22415 AC137630.3-201ENST00000607245 391 ntBASIC19.96■□□□□ 0.79
USF1P22415 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC19.96■□□□□ 0.79
USF1P22415 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
USF1P22415 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USF1P22415 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USF1P22415 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
USF1P22415 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC19.95■□□□□ 0.78
USF1P22415 UNC93B8-201ENST00000511903 705 ntBASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms