Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
TRIM49D1C9J1S8 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
TRIM49D1C9J1S8 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
TRIM49D1C9J1S8 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC23.74■■□□□ 1.39
TRIM49D1C9J1S8 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
TRIM49D1C9J1S8 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
TRIM49D1C9J1S8 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
TRIM49D1C9J1S8 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
TRIM49D1C9J1S8 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
TRIM49D1C9J1S8 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC23.73■■□□□ 1.39
TRIM49D1C9J1S8 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
TRIM49D1C9J1S8 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
TRIM49D1C9J1S8 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC23.73■■□□□ 1.39
TRIM49D1C9J1S8 LINC00543-201ENST00000567234 1845 ntBASIC23.73■■□□□ 1.39
TRIM49D1C9J1S8 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
TRIM49D1C9J1S8 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
TRIM49D1C9J1S8 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
TRIM49D1C9J1S8 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
TRIM49D1C9J1S8 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
TRIM49D1C9J1S8 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
TRIM49D1C9J1S8 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC23.72■■□□□ 1.39
TRIM49D1C9J1S8 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
TRIM49D1C9J1S8 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC23.71■■□□□ 1.39
TRIM49D1C9J1S8 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
TRIM49D1C9J1S8 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.71■■□□□ 1.39
TRIM49D1C9J1S8 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
TRIM49D1C9J1S8 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
TRIM49D1C9J1S8 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
TRIM49D1C9J1S8 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
TRIM49D1C9J1S8 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
TRIM49D1C9J1S8 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
TRIM49D1C9J1S8 METRNL-202ENST00000570778 967 ntTSL 5 BASIC23.7■■□□□ 1.38
TRIM49D1C9J1S8 MIR3648-2-201ENST00000581792 180 ntBASIC23.7■■□□□ 1.38
TRIM49D1C9J1S8 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC23.7■■□□□ 1.38
TRIM49D1C9J1S8 MIR3648-1-201ENST00000615959 180 ntBASIC23.7■■□□□ 1.38
TRIM49D1C9J1S8 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC23.7■■□□□ 1.38
TRIM49D1C9J1S8 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
TRIM49D1C9J1S8 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
TRIM49D1C9J1S8 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
TRIM49D1C9J1S8 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
TRIM49D1C9J1S8 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
TRIM49D1C9J1S8 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC23.69■■□□□ 1.38
TRIM49D1C9J1S8 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
TRIM49D1C9J1S8 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TRIM49D1C9J1S8 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC23.69■■□□□ 1.38
TRIM49D1C9J1S8 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TRIM49D1C9J1S8 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC23.69■■□□□ 1.38
TRIM49D1C9J1S8 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TRIM49D1C9J1S8 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
TRIM49D1C9J1S8 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
TRIM49D1C9J1S8 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC23.69■■□□□ 1.38
TRIM49D1C9J1S8 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
TRIM49D1C9J1S8 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
TRIM49D1C9J1S8 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
TRIM49D1C9J1S8 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC23.67■■□□□ 1.38
TRIM49D1C9J1S8 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
TRIM49D1C9J1S8 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC23.67■■□□□ 1.38
TRIM49D1C9J1S8 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
TRIM49D1C9J1S8 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
TRIM49D1C9J1S8 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
TRIM49D1C9J1S8 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
TRIM49D1C9J1S8 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
TRIM49D1C9J1S8 AL157400.5-201ENST00000507624 621 ntBASIC23.66■■□□□ 1.38
TRIM49D1C9J1S8 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TRIM49D1C9J1S8 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
TRIM49D1C9J1S8 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TRIM49D1C9J1S8 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TRIM49D1C9J1S8 CASK-201ENST00000378154 2494 ntTSL 5 BASIC23.66■■□□□ 1.38
TRIM49D1C9J1S8 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TRIM49D1C9J1S8 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
TRIM49D1C9J1S8 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC23.65■■□□□ 1.38
TRIM49D1C9J1S8 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
TRIM49D1C9J1S8 PFN2-211ENST00000489155 636 ntTSL 4 BASIC23.65■■□□□ 1.38
TRIM49D1C9J1S8 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC23.65■■□□□ 1.38
TRIM49D1C9J1S8 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC23.65■■□□□ 1.38
TRIM49D1C9J1S8 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
TRIM49D1C9J1S8 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC23.65■■□□□ 1.38
TRIM49D1C9J1S8 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
TRIM49D1C9J1S8 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
TRIM49D1C9J1S8 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.38
TRIM49D1C9J1S8 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC23.64■■□□□ 1.38
TRIM49D1C9J1S8 ABHD17AP4-201ENST00000411545 909 ntBASIC23.64■■□□□ 1.37
TRIM49D1C9J1S8 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC23.64■■□□□ 1.37
TRIM49D1C9J1S8 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC23.64■■□□□ 1.37
TRIM49D1C9J1S8 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.64■■□□□ 1.37
TRIM49D1C9J1S8 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC23.64■■□□□ 1.37
TRIM49D1C9J1S8 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
TRIM49D1C9J1S8 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
TRIM49D1C9J1S8 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC23.64■■□□□ 1.37
TRIM49D1C9J1S8 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
TRIM49D1C9J1S8 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
TRIM49D1C9J1S8 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
TRIM49D1C9J1S8 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
TRIM49D1C9J1S8 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TRIM49D1C9J1S8 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
TRIM49D1C9J1S8 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TRIM49D1C9J1S8 AC025884.2-201ENST00000553429 711 ntBASIC23.63■■□□□ 1.37
TRIM49D1C9J1S8 AC016575.1-201ENST00000607026 382 ntBASIC23.63■■□□□ 1.37
TRIM49D1C9J1S8 AC141586.4-201ENST00000624558 1573 ntBASIC23.63■■□□□ 1.37
TRIM49D1C9J1S8 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC23.63■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms