Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
PCDHA3Q9Y5H8 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 AL031055.1-201ENST00000606362 631 ntBASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHA3Q9Y5H8 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 AL031432.2-201ENST00000566714 459 ntBASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 AL928711.1-201ENST00000570165 459 ntBASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 AL645728.2-201ENST00000641974 660 ntBASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHA3Q9Y5H8 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.17■□□□□ 0.34
PCDHA3Q9Y5H8 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC17.17■□□□□ 0.34
PCDHA3Q9Y5H8 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHA3Q9Y5H8 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
PCDHA3Q9Y5H8 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
PCDHA3Q9Y5H8 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHA3Q9Y5H8 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
PCDHA3Q9Y5H8 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHA3Q9Y5H8 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHA3Q9Y5H8 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHA3Q9Y5H8 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms