Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 DUT-210ENST00000559935 569 ntTSL 3 BASIC20.57■□□□□ 0.88
CHMP3Q9Y3E7 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC20.57■□□□□ 0.88
CHMP3Q9Y3E7 AC073389.1-201ENST00000595595 795 ntBASIC20.57■□□□□ 0.88
CHMP3Q9Y3E7 AC003101.2-201ENST00000612557 442 ntBASIC20.57■□□□□ 0.88
CHMP3Q9Y3E7 AP3S2-216ENST00000617003 1561 ntBASIC20.57■□□□□ 0.88
CHMP3Q9Y3E7 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP3Q9Y3E7 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP3Q9Y3E7 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CHMP3Q9Y3E7 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP3Q9Y3E7 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP3Q9Y3E7 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP3Q9Y3E7 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 RARRES2P9-201ENST00000565168 469 ntBASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 AL139011.1-202ENST00000642063 584 ntBASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 FOXO1B-201ENST00000504678 1527 ntBASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC20.56■□□□□ 0.88
CHMP3Q9Y3E7 AC079328.2-201ENST00000561241 3354 ntBASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 WRB-204ENST00000398753 699 ntTSL 3 BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 SPCS2P1-201ENST00000561636 679 ntBASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 FO538757.1-201ENST00000623083 1397 ntBASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CHMP3Q9Y3E7 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP3Q9Y3E7 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP3Q9Y3E7 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP3Q9Y3E7 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
CHMP3Q9Y3E7 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
CHMP3Q9Y3E7 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CHMP3Q9Y3E7 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP3Q9Y3E7 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP3Q9Y3E7 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC20.54■□□□□ 0.88
CHMP3Q9Y3E7 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC20.54■□□□□ 0.88
CHMP3Q9Y3E7 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC20.54■□□□□ 0.88
CHMP3Q9Y3E7 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC20.54■□□□□ 0.88
CHMP3Q9Y3E7 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC20.54■□□□□ 0.88
CHMP3Q9Y3E7 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC20.54■□□□□ 0.88
CHMP3Q9Y3E7 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC20.54■□□□□ 0.88
CHMP3Q9Y3E7 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms