Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 U82695.1-201ENST00000635752 1889 ntBASIC17.63■□□□□ 0.41
CNTN3Q9P232 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 AC092171.3-201ENST00000610122 2651 ntBASIC17.63■□□□□ 0.41
CNTN3Q9P232 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 BASP1P1-201ENST00000430708 665 ntBASIC17.63■□□□□ 0.41
CNTN3Q9P232 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 AC105021.1-202ENST00000570572 669 ntBASIC17.63■□□□□ 0.41
CNTN3Q9P232 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 AC073592.8-201ENST00000624126 511 ntBASIC17.63■□□□□ 0.41
CNTN3Q9P232 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.63■□□□□ 0.41
CNTN3Q9P232 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CNTN3Q9P232 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CNTN3Q9P232 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CNTN3Q9P232 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CNTN3Q9P232 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CNTN3Q9P232 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CNTN3Q9P232 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CNTN3Q9P232 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 HLA-V-204ENST00000476601 1289 ntBASIC17.62■□□□□ 0.41
CNTN3Q9P232 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 RNA5SP421-201ENST00000516864 134 ntBASIC17.62■□□□□ 0.41
CNTN3Q9P232 IGHV3-42-201ENST00000520410 361 ntBASIC17.62■□□□□ 0.41
CNTN3Q9P232 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 RN7SL828P-201ENST00000607615 303 ntBASIC17.62■□□□□ 0.41
CNTN3Q9P232 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CNTN3Q9P232 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CNTN3Q9P232 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CNTN3Q9P232 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CNTN3Q9P232 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
CNTN3Q9P232 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CNTN3Q9P232 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.62■□□□□ 0.41
CNTN3Q9P232 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CNTN3Q9P232 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.61■□□□□ 0.41
CNTN3Q9P232 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
CNTN3Q9P232 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.61■□□□□ 0.41
CNTN3Q9P232 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CNTN3Q9P232 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CNTN3Q9P232 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
CNTN3Q9P232 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CNTN3Q9P232 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CNTN3Q9P232 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CNTN3Q9P232 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CNTN3Q9P232 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CNTN3Q9P232 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CNTN3Q9P232 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.61■□□□□ 0.41
CNTN3Q9P232 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms