Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 AC024909.3-201ENST00000611513 2257 ntBASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 OR7E14P-202ENST00000530490 1290 ntBASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 AC006557.2-201ENST00000592985 1240 ntBASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 AF228730.7-201ENST00000641842 219 ntBASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 AC126755.1-201ENST00000525846 6405 ntBASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRIM56Q9BRZ2 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 CYP2A7P1-201ENST00000595391 815 ntBASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 KRT8P39-201ENST00000396270 1433 ntBASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 MTHFR-217ENST00000641820 1569 ntBASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRIM56Q9BRZ2 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 AL596087.1-201ENST00000400979 1969 ntBASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms