Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00477Q96M19 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00477Q96M19 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00477Q96M19 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00477Q96M19 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
LINC00477Q96M19 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00477Q96M19 RPS15P9-201ENST00000494093 319 ntBASIC12.39□□□□□ -0.43
LINC00477Q96M19 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC12.39□□□□□ -0.43
LINC00477Q96M19 AC021087.4-201ENST00000563761 564 ntBASIC12.39□□□□□ -0.43
LINC00477Q96M19 PRELID1P1-202ENST00000567272 903 ntBASIC12.39□□□□□ -0.43
LINC00477Q96M19 WT1-AS_2.1-201ENST00000613208 137 ntBASIC12.39□□□□□ -0.43
LINC00477Q96M19 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC12.39□□□□□ -0.43
LINC00477Q96M19 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC12.39□□□□□ -0.43
LINC00477Q96M19 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
LINC00477Q96M19 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
LINC00477Q96M19 TSPY26P-202ENST00000565928 3884 ntBASIC12.39□□□□□ -0.43
LINC00477Q96M19 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
LINC00477Q96M19 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00477Q96M19 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00477Q96M19 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00477Q96M19 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00477Q96M19 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC12.39□□□□□ -0.43
LINC00477Q96M19 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00477Q96M19 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00477Q96M19 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
LINC00477Q96M19 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00477Q96M19 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00477Q96M19 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC12.39□□□□□ -0.43
LINC00477Q96M19 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00477Q96M19 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00477Q96M19 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 SLC22A20-204ENST00000530038 1673 ntBASIC12.38□□□□□ -0.43
LINC00477Q96M19 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00477Q96M19 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00477Q96M19 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00477Q96M19 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00477Q96M19 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00477Q96M19 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00477Q96M19 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00477Q96M19 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00477Q96M19 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00477Q96M19 ELK2BP-201ENST00000415014 1224 ntBASIC12.38□□□□□ -0.43
LINC00477Q96M19 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 PRR29-207ENST00000580752 458 ntTSL 3 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 AC025062.2-201ENST00000605477 670 ntBASIC12.38□□□□□ -0.43
LINC00477Q96M19 AC010654.1-201ENST00000615722 808 ntBASIC12.38□□□□□ -0.43
LINC00477Q96M19 MIR1199-201ENST00000621445 119 ntBASIC12.38□□□□□ -0.43
LINC00477Q96M19 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 PGM5P2-202ENST00000637225 1043 ntBASIC12.38□□□□□ -0.43
LINC00477Q96M19 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00477Q96M19 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00477Q96M19 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00477Q96M19 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00477Q96M19 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00477Q96M19 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00477Q96M19 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00477Q96M19 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00477Q96M19 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LINC00477Q96M19 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
LINC00477Q96M19 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 NID2-208ENST00000617139 3827 ntTSL 5 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 SLC9A3P2-201ENST00000447821 2021 ntBASIC12.37□□□□□ -0.43
LINC00477Q96M19 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC12.37□□□□□ -0.43
LINC00477Q96M19 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LINC00477Q96M19 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms