Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 SLC25A6P2-201ENST00000497974 877 ntBASIC15.84■□□□□ 0.13
VMP1Q96GC9 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 AC096734.2-201ENST00000562054 433 ntBASIC15.84■□□□□ 0.13
VMP1Q96GC9 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VMP1Q96GC9 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VMP1Q96GC9 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VMP1Q96GC9 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VMP1Q96GC9 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VMP1Q96GC9 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
VMP1Q96GC9 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VMP1Q96GC9 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VMP1Q96GC9 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.84■□□□□ 0.13
VMP1Q96GC9 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VMP1Q96GC9 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.83■□□□□ 0.13
VMP1Q96GC9 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VMP1Q96GC9 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC15.83■□□□□ 0.13
VMP1Q96GC9 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.13
VMP1Q96GC9 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
VMP1Q96GC9 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.83■□□□□ 0.13
VMP1Q96GC9 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VMP1Q96GC9 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VMP1Q96GC9 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.83■□□□□ 0.13
VMP1Q96GC9 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VMP1Q96GC9 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
VMP1Q96GC9 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VMP1Q96GC9 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VMP1Q96GC9 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VMP1Q96GC9 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
VMP1Q96GC9 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VMP1Q96GC9 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
VMP1Q96GC9 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.83■□□□□ 0.12
VMP1Q96GC9 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VMP1Q96GC9 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VMP1Q96GC9 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VMP1Q96GC9 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VMP1Q96GC9 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.83■□□□□ 0.12
VMP1Q96GC9 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.83■□□□□ 0.12
VMP1Q96GC9 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.83■□□□□ 0.12
VMP1Q96GC9 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.83■□□□□ 0.12
VMP1Q96GC9 KRT18P2-201ENST00000447938 1258 ntBASIC15.83■□□□□ 0.12
VMP1Q96GC9 CXCL1P1-201ENST00000502804 216 ntBASIC15.83■□□□□ 0.12
VMP1Q96GC9 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.83■□□□□ 0.12
VMP1Q96GC9 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.83■□□□□ 0.12
VMP1Q96GC9 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.83■□□□□ 0.12
VMP1Q96GC9 AC010507.1-201ENST00000633895 436 ntBASIC15.83■□□□□ 0.12
VMP1Q96GC9 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VMP1Q96GC9 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15.83■□□□□ 0.12
VMP1Q96GC9 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VMP1Q96GC9 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VMP1Q96GC9 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.12
VMP1Q96GC9 AC002310.6-201ENST00000624451 1377 ntBASIC15.83■□□□□ 0.12
VMP1Q96GC9 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
VMP1Q96GC9 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
VMP1Q96GC9 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.83■□□□□ 0.12
VMP1Q96GC9 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VMP1Q96GC9 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VMP1Q96GC9 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
VMP1Q96GC9 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VMP1Q96GC9 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VMP1Q96GC9 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VMP1Q96GC9 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VMP1Q96GC9 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VMP1Q96GC9 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
VMP1Q96GC9 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.82■□□□□ 0.12
VMP1Q96GC9 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VMP1Q96GC9 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
VMP1Q96GC9 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VMP1Q96GC9 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.82■□□□□ 0.12
VMP1Q96GC9 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.82■□□□□ 0.12
VMP1Q96GC9 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VMP1Q96GC9 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.82■□□□□ 0.12
VMP1Q96GC9 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VMP1Q96GC9 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.82■□□□□ 0.12
VMP1Q96GC9 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VMP1Q96GC9 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.82■□□□□ 0.12
VMP1Q96GC9 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.82■□□□□ 0.12
VMP1Q96GC9 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VMP1Q96GC9 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.82■□□□□ 0.12
VMP1Q96GC9 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VMP1Q96GC9 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC15.82■□□□□ 0.12
VMP1Q96GC9 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.82■□□□□ 0.12
VMP1Q96GC9 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.82■□□□□ 0.12
VMP1Q96GC9 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
VMP1Q96GC9 AC002347.1-201ENST00000569543 541 ntBASIC15.82■□□□□ 0.12
VMP1Q96GC9 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.82■□□□□ 0.12
VMP1Q96GC9 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VMP1Q96GC9 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VMP1Q96GC9 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.82■□□□□ 0.12
VMP1Q96GC9 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms