Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC15.35■□□□□ 0.05
ZNF540Q8NDQ6 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.35■□□□□ 0.05
ZNF540Q8NDQ6 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ZNF540Q8NDQ6 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.35■□□□□ 0.05
ZNF540Q8NDQ6 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ZNF540Q8NDQ6 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ZNF540Q8NDQ6 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.35■□□□□ 0.05
ZNF540Q8NDQ6 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ZNF540Q8NDQ6 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
ZNF540Q8NDQ6 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.35■□□□□ 0.05
ZNF540Q8NDQ6 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
ZNF540Q8NDQ6 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.35■□□□□ 0.05
ZNF540Q8NDQ6 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
ZNF540Q8NDQ6 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ZNF540Q8NDQ6 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.35■□□□□ 0.05
ZNF540Q8NDQ6 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 AL161772.1-201ENST00000610494 4412 ntBASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 KRT16P4-201ENST00000453883 522 ntBASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 ABR-204ENST00000543210 1049 ntTSL 2 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 ABR-217ENST00000572441 563 ntTSL 4 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 AL592071.1-201ENST00000611956 408 ntBASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 LINC00895-201ENST00000629028 1637 ntBASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 KRT8P10-201ENST00000450021 1447 ntBASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC15.34■□□□□ 0.05
ZNF540Q8NDQ6 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.33■□□□□ 0.05
ZNF540Q8NDQ6 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.33■□□□□ 0.05
ZNF540Q8NDQ6 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
ZNF540Q8NDQ6 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
ZNF540Q8NDQ6 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC15.33■□□□□ 0.05
ZNF540Q8NDQ6 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
ZNF540Q8NDQ6 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
ZNF540Q8NDQ6 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.33■□□□□ 0.05
ZNF540Q8NDQ6 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.33■□□□□ 0.05
ZNF540Q8NDQ6 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
ZNF540Q8NDQ6 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
ZNF540Q8NDQ6 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC15.33■□□□□ 0.05
ZNF540Q8NDQ6 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
ZNF540Q8NDQ6 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
ZNF540Q8NDQ6 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
ZNF540Q8NDQ6 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
ZNF540Q8NDQ6 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.33■□□□□ 0.04
ZNF540Q8NDQ6 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms