Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.49■□□□□ 0.39
SOX4Q06945 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SOX4Q06945 AC009477.1-201ENST00000452936 217 ntBASIC17.49■□□□□ 0.39
SOX4Q06945 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX4Q06945 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX4Q06945 AC009407.1-201ENST00000568958 598 ntBASIC17.49■□□□□ 0.39
SOX4Q06945 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX4Q06945 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.49■□□□□ 0.39
SOX4Q06945 NKILA-202ENST00000614771 2598 ntBASIC17.49■□□□□ 0.39
SOX4Q06945 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX4Q06945 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
SOX4Q06945 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX4Q06945 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX4Q06945 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.49■□□□□ 0.39
SOX4Q06945 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX4Q06945 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX4Q06945 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX4Q06945 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX4Q06945 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX4Q06945 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX4Q06945 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SOX4Q06945 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SOX4Q06945 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SOX4Q06945 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SOX4Q06945 TMPRSS11CP-201ENST00000453277 683 ntBASIC17.48■□□□□ 0.39
SOX4Q06945 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.48■□□□□ 0.39
SOX4Q06945 LINC02560-201ENST00000596379 459 ntBASIC17.48■□□□□ 0.39
SOX4Q06945 AC009053.2-201ENST00000563701 2365 ntBASIC17.48■□□□□ 0.39
SOX4Q06945 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
SOX4Q06945 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.48■□□□□ 0.39
SOX4Q06945 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
SOX4Q06945 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX4Q06945 AC022144.1-201ENST00000602255 1580 ntBASIC17.48■□□□□ 0.39
SOX4Q06945 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SOX4Q06945 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
SOX4Q06945 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX4Q06945 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.48■□□□□ 0.39
SOX4Q06945 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SOX4Q06945 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.47■□□□□ 0.39
SOX4Q06945 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX4Q06945 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX4Q06945 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.47■□□□□ 0.39
SOX4Q06945 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
SOX4Q06945 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.47■□□□□ 0.39
SOX4Q06945 LTB4R2-202ENST00000528054 3092 ntBASIC17.47■□□□□ 0.39
SOX4Q06945 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX4Q06945 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SOX4Q06945 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.47■□□□□ 0.39
SOX4Q06945 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
SOX4Q06945 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SOX4Q06945 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SOX4Q06945 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX4Q06945 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.47■□□□□ 0.39
SOX4Q06945 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.47■□□□□ 0.39
SOX4Q06945 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SOX4Q06945 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17.47■□□□□ 0.39
SOX4Q06945 SERBP1P5-201ENST00000510079 1181 ntBASIC17.47■□□□□ 0.39
SOX4Q06945 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX4Q06945 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.47■□□□□ 0.39
SOX4Q06945 AC008761.3-201ENST00000624803 892 ntBASIC17.47■□□□□ 0.39
SOX4Q06945 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SOX4Q06945 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.47■□□□□ 0.39
SOX4Q06945 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX4Q06945 ME2P1-201ENST00000426028 1970 ntBASIC17.47■□□□□ 0.39
SOX4Q06945 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX4Q06945 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.47■□□□□ 0.39
SOX4Q06945 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SOX4Q06945 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX4Q06945 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX4Q06945 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
SOX4Q06945 AC090340.1-201ENST00000620778 4980 ntBASIC17.47■□□□□ 0.39
SOX4Q06945 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX4Q06945 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.47■□□□□ 0.39
SOX4Q06945 AC087499.5-201ENST00000452760 1342 ntBASIC17.47■□□□□ 0.39
SOX4Q06945 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SOX4Q06945 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.46■□□□□ 0.39
SOX4Q06945 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.46■□□□□ 0.39
SOX4Q06945 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.46■□□□□ 0.39
SOX4Q06945 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SOX4Q06945 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SOX4Q06945 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.46■□□□□ 0.39
SOX4Q06945 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SOX4Q06945 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.46■□□□□ 0.39
SOX4Q06945 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SOX4Q06945 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX4Q06945 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX4Q06945 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.46■□□□□ 0.39
SOX4Q06945 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.46■□□□□ 0.39
SOX4Q06945 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.46■□□□□ 0.39
SOX4Q06945 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.46■□□□□ 0.39
SOX4Q06945 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.46■□□□□ 0.39
SOX4Q06945 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SOX4Q06945 POU5F1P6-201ENST00000466990 990 ntBASIC17.46■□□□□ 0.39
SOX4Q06945 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC17.46■□□□□ 0.39
SOX4Q06945 AL512361.1-201ENST00000554200 418 ntBASIC17.46■□□□□ 0.39
SOX4Q06945 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SOX4Q06945 MIR4321-201ENST00000592276 80 ntBASIC17.46■□□□□ 0.39
SOX4Q06945 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
SOX4Q06945 YTHDF3-AS1-201ENST00000603538 718 ntBASIC17.46■□□□□ 0.39
SOX4Q06945 AC008738.7-201ENST00000609744 511 ntBASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms