Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
HOXA1P49639 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
HOXA1P49639 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
HOXA1P49639 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC13.75□□□□□ -0.21
HOXA1P49639 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
HOXA1P49639 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC13.75□□□□□ -0.21
HOXA1P49639 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 AC073347.1-201ENST00000421633 2643 ntBASIC13.75□□□□□ -0.21
HOXA1P49639 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
HOXA1P49639 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 ARHGAP23P1-201ENST00000562773 1937 ntBASIC13.75□□□□□ -0.21
HOXA1P49639 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
HOXA1P49639 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC13.75□□□□□ -0.21
HOXA1P49639 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC13.75□□□□□ -0.21
HOXA1P49639 AL671277.2-201ENST00000458060 996 ntBASIC13.75□□□□□ -0.21
HOXA1P49639 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC13.75□□□□□ -0.21
HOXA1P49639 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC13.75□□□□□ -0.21
HOXA1P49639 LINC01238-205ENST00000567549 1107 ntBASIC13.75□□□□□ -0.21
HOXA1P49639 AC090616.6-201ENST00000582640 721 ntBASIC13.75□□□□□ -0.21
HOXA1P49639 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC13.75□□□□□ -0.21
HOXA1P49639 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC13.75□□□□□ -0.21
HOXA1P49639 DFFB-212ENST00000625756 649 ntTSL 5 BASIC13.75□□□□□ -0.21
HOXA1P49639 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC13.75□□□□□ -0.21
HOXA1P49639 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.75□□□□□ -0.21
HOXA1P49639 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
HOXA1P49639 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.75□□□□□ -0.21
HOXA1P49639 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
HOXA1P49639 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC13.75□□□□□ -0.21
HOXA1P49639 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 AP002414.2-201ENST00000591780 3365 ntBASIC13.75□□□□□ -0.21
HOXA1P49639 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
HOXA1P49639 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC13.75□□□□□ -0.21
HOXA1P49639 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC13.75□□□□□ -0.21
HOXA1P49639 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC13.75□□□□□ -0.21
HOXA1P49639 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
HOXA1P49639 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC13.75□□□□□ -0.21
HOXA1P49639 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC13.74□□□□□ -0.21
HOXA1P49639 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC13.74□□□□□ -0.21
HOXA1P49639 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC13.74□□□□□ -0.21
HOXA1P49639 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
HOXA1P49639 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
HOXA1P49639 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
HOXA1P49639 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC13.74□□□□□ -0.21
HOXA1P49639 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC13.74□□□□□ -0.21
HOXA1P49639 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
HOXA1P49639 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
HOXA1P49639 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC13.74□□□□□ -0.21
HOXA1P49639 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC13.74□□□□□ -0.21
HOXA1P49639 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
HOXA1P49639 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC13.74□□□□□ -0.21
HOXA1P49639 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC13.74□□□□□ -0.21
HOXA1P49639 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC13.74□□□□□ -0.21
HOXA1P49639 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC13.74□□□□□ -0.21
HOXA1P49639 AC005336.2-201ENST00000593183 939 ntBASIC13.74□□□□□ -0.21
HOXA1P49639 AC012306.2-201ENST00000609350 630 ntBASIC13.74□□□□□ -0.21
HOXA1P49639 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
HOXA1P49639 AC007191.1-201ENST00000623179 2995 ntBASIC13.74□□□□□ -0.21
HOXA1P49639 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC13.74□□□□□ -0.21
HOXA1P49639 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
HOXA1P49639 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms