Protein–RNA interactions for Protein: P46736

BRCC3, Lys-63-specific deubiquitinase BRCC36, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3P46736 AC022144.1-201ENST00000602255 1580 ntBASIC17.45■□□□□ 0.38
BRCC3P46736 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
BRCC3P46736 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
BRCC3P46736 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.44■□□□□ 0.38
BRCC3P46736 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
BRCC3P46736 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
BRCC3P46736 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.44■□□□□ 0.38
BRCC3P46736 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
BRCC3P46736 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.44■□□□□ 0.38
BRCC3P46736 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.44■□□□□ 0.38
BRCC3P46736 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 FAM207CP-201ENST00000443486 507 ntBASIC17.44■□□□□ 0.38
BRCC3P46736 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.44■□□□□ 0.38
BRCC3P46736 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC17.44■□□□□ 0.38
BRCC3P46736 AL079307.3-201ENST00000556114 283 ntBASIC17.44■□□□□ 0.38
BRCC3P46736 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.44■□□□□ 0.38
BRCC3P46736 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.44■□□□□ 0.38
BRCC3P46736 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC17.44■□□□□ 0.38
BRCC3P46736 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.44■□□□□ 0.38
BRCC3P46736 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.44■□□□□ 0.38
BRCC3P46736 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.44■□□□□ 0.38
BRCC3P46736 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
BRCC3P46736 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.44■□□□□ 0.38
BRCC3P46736 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
BRCC3P46736 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCC3P46736 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCC3P46736 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
BRCC3P46736 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.43■□□□□ 0.38
BRCC3P46736 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.43■□□□□ 0.38
BRCC3P46736 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCC3P46736 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
BRCC3P46736 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCC3P46736 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCC3P46736 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCC3P46736 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCC3P46736 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
BRCC3P46736 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.43■□□□□ 0.38
BRCC3P46736 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
BRCC3P46736 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCC3P46736 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCC3P46736 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
BRCC3P46736 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
BRCC3P46736 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCC3P46736 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
BRCC3P46736 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.43■□□□□ 0.38
BRCC3P46736 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.43■□□□□ 0.38
BRCC3P46736 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
BRCC3P46736 TAF8-206ENST00000472818 719 ntTSL 2 BASIC17.43■□□□□ 0.38
BRCC3P46736 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
BRCC3P46736 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17.43■□□□□ 0.38
BRCC3P46736 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.43■□□□□ 0.38
BRCC3P46736 AL844908.2-201ENST00000609461 460 ntBASIC17.43■□□□□ 0.38
BRCC3P46736 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCC3P46736 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.43■□□□□ 0.38
BRCC3P46736 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC17.43■□□□□ 0.38
BRCC3P46736 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.43■□□□□ 0.38
BRCC3P46736 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.43■□□□□ 0.38
BRCC3P46736 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
BRCC3P46736 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
BRCC3P46736 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.43■□□□□ 0.38
BRCC3P46736 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCC3P46736 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.43■□□□□ 0.38
BRCC3P46736 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCC3P46736 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCC3P46736 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
BRCC3P46736 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCC3P46736 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCC3P46736 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCC3P46736 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCC3P46736 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCC3P46736 LINC01144-201ENST00000626198 1710 ntBASIC17.42■□□□□ 0.38
BRCC3P46736 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
BRCC3P46736 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
BRCC3P46736 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCC3P46736 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCC3P46736 AL080243.2-201ENST00000418783 582 ntBASIC17.42■□□□□ 0.38
BRCC3P46736 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.42■□□□□ 0.38
BRCC3P46736 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
BRCC3P46736 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
BRCC3P46736 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms