Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
VCANP13611 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VCANP13611 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.27
VCANP13611 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VCANP13611 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VCANP13611 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
VCANP13611 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC16.74■□□□□ 0.27
VCANP13611 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VCANP13611 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC16.74■□□□□ 0.27
VCANP13611 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC16.74■□□□□ 0.27
VCANP13611 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VCANP13611 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC16.74■□□□□ 0.27
VCANP13611 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC16.74■□□□□ 0.27
VCANP13611 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.74■□□□□ 0.27
VCANP13611 AC106760.1-201ENST00000508690 800 ntBASIC16.74■□□□□ 0.27
VCANP13611 AC061975.2-201ENST00000581722 295 ntBASIC16.74■□□□□ 0.27
VCANP13611 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.74■□□□□ 0.27
VCANP13611 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCANP13611 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCANP13611 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.73■□□□□ 0.27
VCANP13611 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCANP13611 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VCANP13611 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.73■□□□□ 0.27
VCANP13611 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VCANP13611 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
VCANP13611 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCANP13611 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
VCANP13611 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCANP13611 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VCANP13611 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VCANP13611 PFN2-202ENST00000423691 911 ntTSL 2 BASIC16.73■□□□□ 0.27
VCANP13611 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.73■□□□□ 0.27
VCANP13611 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.73■□□□□ 0.27
VCANP13611 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.73■□□□□ 0.27
VCANP13611 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCANP13611 CYP51A1P3-201ENST00000400072 1428 ntBASIC16.73■□□□□ 0.27
VCANP13611 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.73■□□□□ 0.27
VCANP13611 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.73■□□□□ 0.27
VCANP13611 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC16.73■□□□□ 0.27
VCANP13611 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.73■□□□□ 0.27
VCANP13611 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.73■□□□□ 0.27
VCANP13611 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.73■□□□□ 0.27
VCANP13611 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCANP13611 DEF8-202ENST00000418391 852 ntTSL 2 BASIC16.73■□□□□ 0.27
VCANP13611 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.73■□□□□ 0.27
VCANP13611 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VCANP13611 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCANP13611 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
VCANP13611 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCANP13611 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCANP13611 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VCANP13611 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.73■□□□□ 0.27
VCANP13611 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCANP13611 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VCANP13611 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC16.72■□□□□ 0.27
VCANP13611 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
VCANP13611 AL355864.2-201ENST00000447420 863 ntBASIC16.72■□□□□ 0.27
VCANP13611 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC16.72■□□□□ 0.27
VCANP13611 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC16.72■□□□□ 0.27
VCANP13611 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.72■□□□□ 0.27
VCANP13611 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
VCANP13611 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
VCANP13611 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC16.72■□□□□ 0.27
VCANP13611 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.72■□□□□ 0.27
VCANP13611 AC138649.2-201ENST00000615886 705 ntBASIC16.72■□□□□ 0.27
VCANP13611 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.72■□□□□ 0.27
VCANP13611 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.72■□□□□ 0.27
VCANP13611 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCANP13611 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCANP13611 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCANP13611 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VCANP13611 PP12613-201ENST00000424958 2230 ntBASIC16.72■□□□□ 0.27
VCANP13611 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCANP13611 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VCANP13611 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCANP13611 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCANP13611 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCANP13611 CYP46A4P-201ENST00000414953 267 ntBASIC16.72■□□□□ 0.27
VCANP13611 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.72■□□□□ 0.27
VCANP13611 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC16.72■□□□□ 0.27
VCANP13611 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC16.72■□□□□ 0.27
VCANP13611 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.72■□□□□ 0.27
VCANP13611 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCANP13611 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
VCANP13611 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCANP13611 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCANP13611 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCANP13611 AL512430.1-201ENST00000392575 860 ntBASIC16.72■□□□□ 0.27
VCANP13611 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC16.72■□□□□ 0.27
VCANP13611 RN7SL181P-201ENST00000462921 277 ntBASIC16.72■□□□□ 0.27
VCANP13611 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.72■□□□□ 0.27
VCANP13611 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16.72■□□□□ 0.27
VCANP13611 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCANP13611 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC16.72■□□□□ 0.27
VCANP13611 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCANP13611 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC16.72■□□□□ 0.27
VCANP13611 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
VCANP13611 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCANP13611 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.71■□□□□ 0.27
VCANP13611 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms