Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.99■□□□□ 0.15
LDLRP01130 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
LDLRP01130 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.99■□□□□ 0.15
LDLRP01130 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
LDLRP01130 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 AC009947.1-201ENST00000444350 727 ntBASIC15.99■□□□□ 0.15
LDLRP01130 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.99■□□□□ 0.15
LDLRP01130 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.99■□□□□ 0.15
LDLRP01130 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC15.99■□□□□ 0.15
LDLRP01130 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC15.99■□□□□ 0.15
LDLRP01130 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC15.99■□□□□ 0.15
LDLRP01130 MTDHP4-201ENST00000600287 670 ntBASIC15.99■□□□□ 0.15
LDLRP01130 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.99■□□□□ 0.15
LDLRP01130 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC15.99■□□□□ 0.15
LDLRP01130 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC15.99■□□□□ 0.15
LDLRP01130 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
LDLRP01130 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
LDLRP01130 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
LDLRP01130 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LDLRP01130 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.98■□□□□ 0.15
LDLRP01130 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.98■□□□□ 0.15
LDLRP01130 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.98■□□□□ 0.15
LDLRP01130 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.98■□□□□ 0.15
LDLRP01130 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 TUBB8P12-201ENST00000308911 1335 ntBASIC15.98■□□□□ 0.15
LDLRP01130 TUBB7P-202ENST00000428444 1305 ntBASIC15.98■□□□□ 0.15
LDLRP01130 TUBB8P7-204ENST00000567960 1332 ntBASIC15.98■□□□□ 0.15
LDLRP01130 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 GPR89P-201ENST00000407924 1495 ntBASIC15.98■□□□□ 0.15
LDLRP01130 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
LDLRP01130 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
LDLRP01130 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
LDLRP01130 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
LDLRP01130 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.98■□□□□ 0.15
LDLRP01130 FAM8A3P-201ENST00000427218 844 ntBASIC15.98■□□□□ 0.15
LDLRP01130 PON3-203ENST00000427422 894 ntTSL 3 BASIC15.98■□□□□ 0.15
LDLRP01130 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC15.98■□□□□ 0.15
LDLRP01130 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.98■□□□□ 0.15
LDLRP01130 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.98■□□□□ 0.15
LDLRP01130 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.98■□□□□ 0.15
LDLRP01130 SNHG9-202ENST00000564014 471 ntBASIC15.98■□□□□ 0.15
LDLRP01130 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.98■□□□□ 0.15
LDLRP01130 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC15.98■□□□□ 0.15
LDLRP01130 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.98■□□□□ 0.15
LDLRP01130 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC15.98■□□□□ 0.15
LDLRP01130 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.98■□□□□ 0.15
LDLRP01130 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LDLRP01130 AC005052.1-201ENST00000625181 2492 ntBASIC15.97■□□□□ 0.15
LDLRP01130 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LDLRP01130 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LDLRP01130 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LDLRP01130 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.97■□□□□ 0.15
LDLRP01130 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.97■□□□□ 0.15
LDLRP01130 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LDLRP01130 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LDLRP01130 AC104640.1-201ENST00000562617 2109 ntBASIC15.97■□□□□ 0.15
LDLRP01130 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LDLRP01130 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LDLRP01130 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
LDLRP01130 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LDLRP01130 AC125634.1-201ENST00000438758 1403 ntBASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms