Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.93■□□□□ 0.3
TOP3BO95985 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.93■□□□□ 0.3
TOP3BO95985 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.93■□□□□ 0.3
TOP3BO95985 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
TOP3BO95985 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
TOP3BO95985 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.93■□□□□ 0.3
TOP3BO95985 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 SIGLEC16-201ENST00000599858 1437 ntBASIC16.93■□□□□ 0.3
TOP3BO95985 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.93■□□□□ 0.3
TOP3BO95985 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
TOP3BO95985 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.93■□□□□ 0.3
TOP3BO95985 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
TOP3BO95985 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
TOP3BO95985 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.92■□□□□ 0.3
TOP3BO95985 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.92■□□□□ 0.3
TOP3BO95985 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.92■□□□□ 0.3
TOP3BO95985 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.92■□□□□ 0.3
TOP3BO95985 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
TOP3BO95985 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.92■□□□□ 0.3
TOP3BO95985 GAPDHP21-201ENST00000450301 1010 ntBASIC16.92■□□□□ 0.3
TOP3BO95985 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.92■□□□□ 0.3
TOP3BO95985 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.92■□□□□ 0.3
TOP3BO95985 RNA5SP421-201ENST00000516864 134 ntBASIC16.92■□□□□ 0.3
TOP3BO95985 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 AC087641.1-201ENST00000557561 1021 ntBASIC16.92■□□□□ 0.3
TOP3BO95985 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.92■□□□□ 0.3
TOP3BO95985 RN7SL204P-201ENST00000582831 262 ntBASIC16.92■□□□□ 0.3
TOP3BO95985 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.92■□□□□ 0.3
TOP3BO95985 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.92■□□□□ 0.3
TOP3BO95985 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.92■□□□□ 0.3
TOP3BO95985 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
TOP3BO95985 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
TOP3BO95985 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
TOP3BO95985 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
TOP3BO95985 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TOP3BO95985 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
TOP3BO95985 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.91■□□□□ 0.3
TOP3BO95985 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TOP3BO95985 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
TOP3BO95985 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TOP3BO95985 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.91■□□□□ 0.3
TOP3BO95985 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TOP3BO95985 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TOP3BO95985 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TOP3BO95985 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
TOP3BO95985 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.91■□□□□ 0.3
TOP3BO95985 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.91■□□□□ 0.3
TOP3BO95985 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC16.91■□□□□ 0.3
TOP3BO95985 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.91■□□□□ 0.3
TOP3BO95985 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.91■□□□□ 0.3
TOP3BO95985 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.91■□□□□ 0.3
TOP3BO95985 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TOP3BO95985 AC023141.5-201ENST00000458585 616 ntBASIC16.91■□□□□ 0.3
TOP3BO95985 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC16.91■□□□□ 0.3
TOP3BO95985 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.91■□□□□ 0.3
TOP3BO95985 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC16.91■□□□□ 0.3
TOP3BO95985 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TOP3BO95985 AC096734.2-201ENST00000562054 433 ntBASIC16.91■□□□□ 0.3
TOP3BO95985 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
TOP3BO95985 AC022145.2-201ENST00000598203 171 ntBASIC16.91■□□□□ 0.3
TOP3BO95985 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TOP3BO95985 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
TOP3BO95985 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms