Protein–RNA interactions for Protein: O43924

PDE6D, Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta, humanhuman

Predictions only

Length 150 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDE6DO43924 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC12.82□□□□□ -0.36
PDE6DO43924 ZNF444P1-201ENST00000559497 298 ntBASIC12.82□□□□□ -0.36
PDE6DO43924 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
PDE6DO43924 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
PDE6DO43924 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC12.82□□□□□ -0.36
PDE6DO43924 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDE6DO43924 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDE6DO43924 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDE6DO43924 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDE6DO43924 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
PDE6DO43924 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
PDE6DO43924 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
PDE6DO43924 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC12.82□□□□□ -0.36
PDE6DO43924 AC067750.1-201ENST00000608826 6545 ntBASIC12.82□□□□□ -0.36
PDE6DO43924 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC12.82□□□□□ -0.36
PDE6DO43924 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDE6DO43924 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDE6DO43924 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
PDE6DO43924 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDE6DO43924 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC12.81□□□□□ -0.36
PDE6DO43924 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDE6DO43924 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
PDE6DO43924 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
PDE6DO43924 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
PDE6DO43924 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDE6DO43924 AC026748.1-201ENST00000624349 3251 ntBASIC12.81□□□□□ -0.36
PDE6DO43924 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
PDE6DO43924 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
PDE6DO43924 PCGF3-213ENST00000620529 1899 ntBASIC12.81□□□□□ -0.36
PDE6DO43924 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDE6DO43924 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDE6DO43924 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
PDE6DO43924 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC12.81□□□□□ -0.36
PDE6DO43924 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC12.81□□□□□ -0.36
PDE6DO43924 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC12.81□□□□□ -0.36
PDE6DO43924 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDE6DO43924 HMGA1P5-201ENST00000412453 271 ntBASIC12.81□□□□□ -0.36
PDE6DO43924 ACTG1P4-201ENST00000425123 1122 ntBASIC12.81□□□□□ -0.36
PDE6DO43924 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
PDE6DO43924 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC12.81□□□□□ -0.36
PDE6DO43924 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC12.81□□□□□ -0.36
PDE6DO43924 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC12.81□□□□□ -0.36
PDE6DO43924 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC12.81□□□□□ -0.36
PDE6DO43924 KRT18P6-201ENST00000555540 1265 ntBASIC12.81□□□□□ -0.36
PDE6DO43924 AP000525.1-201ENST00000608286 694 ntBASIC12.81□□□□□ -0.36
PDE6DO43924 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC12.81□□□□□ -0.36
PDE6DO43924 ABBA01031661.1-201ENST00000634362 1253 ntBASIC12.81□□□□□ -0.36
PDE6DO43924 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC12.81□□□□□ -0.36
PDE6DO43924 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDE6DO43924 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC12.81□□□□□ -0.36
PDE6DO43924 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDE6DO43924 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDE6DO43924 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC12.81□□□□□ -0.36
PDE6DO43924 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC12.81□□□□□ -0.36
PDE6DO43924 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
PDE6DO43924 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
PDE6DO43924 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDE6DO43924 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC12.81□□□□□ -0.36
PDE6DO43924 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDE6DO43924 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC12.81□□□□□ -0.36
PDE6DO43924 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
PDE6DO43924 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC12.81□□□□□ -0.36
PDE6DO43924 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC12.81□□□□□ -0.36
PDE6DO43924 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDE6DO43924 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC12.81□□□□□ -0.36
PDE6DO43924 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDE6DO43924 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC12.8□□□□□ -0.36
PDE6DO43924 AC092919.2-201ENST00000623631 1645 ntBASIC12.8□□□□□ -0.36
PDE6DO43924 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDE6DO43924 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDE6DO43924 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDE6DO43924 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDE6DO43924 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDE6DO43924 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC12.8□□□□□ -0.36
PDE6DO43924 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC12.8□□□□□ -0.36
PDE6DO43924 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDE6DO43924 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC12.8□□□□□ -0.36
PDE6DO43924 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
PDE6DO43924 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDE6DO43924 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
PDE6DO43924 AL512652.2-201ENST00000625156 1716 ntBASIC12.8□□□□□ -0.36
PDE6DO43924 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC12.8□□□□□ -0.36
PDE6DO43924 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDE6DO43924 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
PDE6DO43924 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
PDE6DO43924 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC12.8□□□□□ -0.36
PDE6DO43924 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDE6DO43924 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDE6DO43924 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
PDE6DO43924 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC12.8□□□□□ -0.36
PDE6DO43924 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
PDE6DO43924 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC12.8□□□□□ -0.36
PDE6DO43924 GCSHP2-201ENST00000560971 527 ntBASIC12.8□□□□□ -0.36
PDE6DO43924 AC233702.5-201ENST00000584107 538 ntBASIC12.8□□□□□ -0.36
PDE6DO43924 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC12.8□□□□□ -0.36
PDE6DO43924 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC12.8□□□□□ -0.36
PDE6DO43924 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
PDE6DO43924 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
PDE6DO43924 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PDE6DO43924 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms