Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
HMGB3O15347 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC13.32□□□□□ -0.28
HMGB3O15347 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 SRRM4-201ENST00000267260 8477 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
HMGB3O15347 SUPT20HL2-201ENST00000486479 2409 ntBASIC13.32□□□□□ -0.28
HMGB3O15347 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC13.32□□□□□ -0.28
HMGB3O15347 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
HMGB3O15347 KIAA1549-202ENST00000440172 12379 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
HMGB3O15347 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
HMGB3O15347 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC13.32□□□□□ -0.28
HMGB3O15347 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC13.32□□□□□ -0.28
HMGB3O15347 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
HMGB3O15347 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC13.32□□□□□ -0.28
HMGB3O15347 SAPCD2P2-201ENST00000431719 1174 ntBASIC13.32□□□□□ -0.28
HMGB3O15347 AC068472.1-201ENST00000474589 881 ntBASIC13.32□□□□□ -0.28
HMGB3O15347 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC13.32□□□□□ -0.28
HMGB3O15347 CD99P1-205ENST00000527459 561 ntBASIC13.32□□□□□ -0.28
HMGB3O15347 PPOX-214ENST00000535223 664 ntTSL 3 BASIC13.32□□□□□ -0.28
HMGB3O15347 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
HMGB3O15347 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC13.32□□□□□ -0.28
HMGB3O15347 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC13.32□□□□□ -0.28
HMGB3O15347 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC13.32□□□□□ -0.28
HMGB3O15347 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 GPR179-204ENST00000621958 7983 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
HMGB3O15347 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC13.32□□□□□ -0.28
HMGB3O15347 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.32□□□□□ -0.28
HMGB3O15347 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC13.32□□□□□ -0.28
HMGB3O15347 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
HMGB3O15347 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
HMGB3O15347 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC13.32□□□□□ -0.28
HMGB3O15347 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC13.32□□□□□ -0.28
HMGB3O15347 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC13.32□□□□□ -0.28
HMGB3O15347 HLA-DQB2-231ENST00000435145 2026 ntBASIC13.32□□□□□ -0.28
HMGB3O15347 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC13.32□□□□□ -0.28
HMGB3O15347 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
HMGB3O15347 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
HMGB3O15347 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.32□□□□□ -0.28
HMGB3O15347 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC13.31□□□□□ -0.28
HMGB3O15347 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC13.31□□□□□ -0.28
HMGB3O15347 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC13.31□□□□□ -0.28
HMGB3O15347 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 CACNA1G-211ENST00000503485 6768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC13.31□□□□□ -0.28
HMGB3O15347 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.31□□□□□ -0.28
HMGB3O15347 CDH11-201ENST00000268603 6857 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC13.31□□□□□ -0.28
HMGB3O15347 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
HMGB3O15347 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 DDT-203ENST00000403754 569 ntTSL 3 BASIC13.31□□□□□ -0.28
HMGB3O15347 DDT-206ENST00000430101 573 ntTSL 2 BASIC13.31□□□□□ -0.28
HMGB3O15347 AL158047.1-201ENST00000445918 881 ntBASIC13.31□□□□□ -0.28
HMGB3O15347 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC13.31□□□□□ -0.28
HMGB3O15347 AC034232.1-201ENST00000506026 1064 ntBASIC13.31□□□□□ -0.28
HMGB3O15347 EGLN1P1-201ENST00000531623 762 ntBASIC13.31□□□□□ -0.28
HMGB3O15347 GCSHP2-201ENST00000560971 527 ntBASIC13.31□□□□□ -0.28
HMGB3O15347 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC13.31□□□□□ -0.28
HMGB3O15347 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC13.31□□□□□ -0.28
HMGB3O15347 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC13.31□□□□□ -0.28
HMGB3O15347 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC13.31□□□□□ -0.28
HMGB3O15347 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
HMGB3O15347 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
HMGB3O15347 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms