Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 TDH-203ENST00000531764 1110 ntBASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHANK3Q9BYB0 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 APRT-204ENST00000563655 709 ntTSL 5 BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 AC005252.2-201ENST00000624630 1141 ntBASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SHANK3Q9BYB0 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 SOCS2P1-201ENST00000417727 557 ntBASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 RHOQP1-201ENST00000555758 579 ntBASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 MIR6869-201ENST00000619434 62 ntBASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 AL691432.1-201ENST00000596308 1422 ntBASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 KLF2P4-201ENST00000451959 1225 ntBASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 FXR1-221ENST00000491674 365 ntTSL 2 BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 SLC25A47P1-201ENST00000531577 414 ntBASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 DERL2-202ENST00000570848 657 ntTSL 5 BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 AL022328.1-201ENST00000610050 478 ntBASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 PFAS-212ENST00000625942 396 ntTSL 5 BASIC20.9■□□□□ 0.94
SHANK3Q9BYB0 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SHANK3Q9BYB0 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.89■□□□□ 0.94
SHANK3Q9BYB0 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SHANK3Q9BYB0 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SHANK3Q9BYB0 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.89■□□□□ 0.94
SHANK3Q9BYB0 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.94
SHANK3Q9BYB0 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 APOA1-205ENST00000375329 927 ntTSL 2 BASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 ACTBP11-201ENST00000436287 1126 ntBASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 AC012441.1-201ENST00000446669 685 ntBASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 RN7SL190P-201ENST00000582519 257 ntBASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SHANK3Q9BYB0 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHANK3Q9BYB0 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms