Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 WRB-204ENST00000398753 699 ntTSL 3 BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 AC245100.5-201ENST00000452108 331 ntBASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 LITAF-210ENST00000571976 548 ntTSL 2 BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 LITAF-214ENST00000574703 486 ntTSL 2 BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 AC106886.4-201ENST00000623557 2502 ntBASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 MIR770-201ENST00000390219 98 ntBASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 MIR4321-201ENST00000592276 80 ntBASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 AC093512.1-201ENST00000617969 520 ntBASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 GPER1-207ENST00000619052 571 ntTSL 2 BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4AQ9BY43 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 AD000864.1-201ENST00000624076 2295 ntBASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 AC055876.3-201ENST00000431496 288 ntBASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 AC138649.4-201ENST00000612222 287 ntBASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 AL592424.1-201ENST00000563624 1536 ntBASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP4AQ9BY43 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4AQ9BY43 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms