Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS13AQ96RL7 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
VPS13AQ96RL7 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS13AQ96RL7 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS13AQ96RL7 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS13AQ96RL7 AL442647.2-201ENST00000429864 857 ntBASIC16.02■□□□□ 0.16
VPS13AQ96RL7 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.02■□□□□ 0.16
VPS13AQ96RL7 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS13AQ96RL7 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC16.02■□□□□ 0.16
VPS13AQ96RL7 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
VPS13AQ96RL7 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS13AQ96RL7 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS13AQ96RL7 UBALD1-205ENST00000590891 2641 ntBASIC16.02■□□□□ 0.16
VPS13AQ96RL7 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS13AQ96RL7 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS13AQ96RL7 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS13AQ96RL7 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS13AQ96RL7 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS13AQ96RL7 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS13AQ96RL7 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC16.02■□□□□ 0.15
VPS13AQ96RL7 UPF3AP2-201ENST00000457924 1132 ntBASIC16.02■□□□□ 0.15
VPS13AQ96RL7 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.02■□□□□ 0.15
VPS13AQ96RL7 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
VPS13AQ96RL7 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC16.02■□□□□ 0.15
VPS13AQ96RL7 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
VPS13AQ96RL7 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS13AQ96RL7 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS13AQ96RL7 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS13AQ96RL7 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS13AQ96RL7 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.15
VPS13AQ96RL7 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.02■□□□□ 0.15
VPS13AQ96RL7 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS13AQ96RL7 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.02■□□□□ 0.15
VPS13AQ96RL7 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS13AQ96RL7 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS13AQ96RL7 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 SCARNA20.5-201ENST00000516991 142 ntBASIC16.01■□□□□ 0.15
VPS13AQ96RL7 KRT90P-201ENST00000549264 1064 ntBASIC16.01■□□□□ 0.15
VPS13AQ96RL7 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 KRT8P49-201ENST00000604166 1432 ntBASIC16.01■□□□□ 0.15
VPS13AQ96RL7 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC16.01■□□□□ 0.15
VPS13AQ96RL7 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC16.01■□□□□ 0.15
VPS13AQ96RL7 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 AC067852.2-201ENST00000590513 2313 ntBASIC16.01■□□□□ 0.15
VPS13AQ96RL7 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS13AQ96RL7 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS13AQ96RL7 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS13AQ96RL7 Z97205.2-201ENST00000564697 1639 ntBASIC16■□□□□ 0.15
VPS13AQ96RL7 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
VPS13AQ96RL7 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS13AQ96RL7 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
VPS13AQ96RL7 HIST2H2BC-201ENST00000498492 580 ntBASIC16■□□□□ 0.15
VPS13AQ96RL7 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
VPS13AQ96RL7 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC16■□□□□ 0.15
VPS13AQ96RL7 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
VPS13AQ96RL7 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16■□□□□ 0.15
VPS13AQ96RL7 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC16■□□□□ 0.15
VPS13AQ96RL7 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16■□□□□ 0.15
VPS13AQ96RL7 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS13AQ96RL7 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
VPS13AQ96RL7 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
VPS13AQ96RL7 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS13AQ96RL7 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS13AQ96RL7 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16■□□□□ 0.15
VPS13AQ96RL7 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16■□□□□ 0.15
VPS13AQ96RL7 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16■□□□□ 0.15
VPS13AQ96RL7 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms