Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 SART3-203ENST00000546611 1184 ntBASIC17.84■□□□□ 0.45
CCDC42Q96M95 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.84■□□□□ 0.45
CCDC42Q96M95 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC42Q96M95 AC010654.1-201ENST00000615722 808 ntBASIC17.84■□□□□ 0.45
CCDC42Q96M95 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC42Q96M95 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC42Q96M95 SLC9A7P1-201ENST00000554295 3311 ntBASIC17.84■□□□□ 0.45
CCDC42Q96M95 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC42Q96M95 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC42Q96M95 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC42Q96M95 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 AC092384.3-202ENST00000564646 2873 ntBASIC17.84■□□□□ 0.45
CCDC42Q96M95 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
CCDC42Q96M95 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC42Q96M95 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC42Q96M95 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC42Q96M95 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC42Q96M95 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC17.83■□□□□ 0.45
CCDC42Q96M95 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC42Q96M95 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
CCDC42Q96M95 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.83■□□□□ 0.45
CCDC42Q96M95 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC42Q96M95 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
CCDC42Q96M95 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC42Q96M95 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC42Q96M95 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.83■□□□□ 0.45
CCDC42Q96M95 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
CCDC42Q96M95 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC42Q96M95 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.45
CCDC42Q96M95 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC42Q96M95 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
CCDC42Q96M95 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
CCDC42Q96M95 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC42Q96M95 AC103702.1-201ENST00000548801 2630 ntBASIC17.83■□□□□ 0.44
CCDC42Q96M95 AP005117.1-202ENST00000581724 1908 ntBASIC17.83■□□□□ 0.44
CCDC42Q96M95 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC42Q96M95 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC42Q96M95 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC42Q96M95 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.83■□□□□ 0.44
CCDC42Q96M95 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC42Q96M95 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.83■□□□□ 0.44
CCDC42Q96M95 AC087641.1-201ENST00000557561 1021 ntBASIC17.83■□□□□ 0.44
CCDC42Q96M95 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.83■□□□□ 0.44
CCDC42Q96M95 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
CCDC42Q96M95 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.44
CCDC42Q96M95 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC17.83■□□□□ 0.44
CCDC42Q96M95 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
CCDC42Q96M95 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC42Q96M95 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC42Q96M95 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC42Q96M95 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC42Q96M95 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
CCDC42Q96M95 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC42Q96M95 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC42Q96M95 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC42Q96M95 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC42Q96M95 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC42Q96M95 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC42Q96M95 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC42Q96M95 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC42Q96M95 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.82■□□□□ 0.44
CCDC42Q96M95 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC42Q96M95 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC42Q96M95 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CCDC42Q96M95 LINC02447-202ENST00000501888 2146 ntBASIC17.82■□□□□ 0.44
CCDC42Q96M95 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.82■□□□□ 0.44
CCDC42Q96M95 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC42Q96M95 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC42Q96M95 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
CCDC42Q96M95 AC093458.2-201ENST00000623150 629 ntBASIC17.82■□□□□ 0.44
CCDC42Q96M95 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.82■□□□□ 0.44
CCDC42Q96M95 AL805961.1-202ENST00000641562 540 ntBASIC17.82■□□□□ 0.44
CCDC42Q96M95 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CCDC42Q96M95 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC42Q96M95 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CCDC42Q96M95 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC42Q96M95 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC17.82■□□□□ 0.44
CCDC42Q96M95 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC42Q96M95 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC42Q96M95 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CCDC42Q96M95 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC42Q96M95 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CCDC42Q96M95 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC42Q96M95 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC42Q96M95 CDC14C-201ENST00000428251 1719 ntBASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms