Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 HIST2H3DP1-201ENST00000401004 416 ntBASIC12.41□□□□□ -0.42
LINC00477Q96M19 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 PMS2P1-201ENST00000431037 1228 ntBASIC12.41□□□□□ -0.42
LINC00477Q96M19 SLC25A6P2-201ENST00000497974 877 ntBASIC12.41□□□□□ -0.42
LINC00477Q96M19 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 BLK-205ENST00000529894 2017 ntTSL 5 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 AL445228.2-201ENST00000605589 952 ntBASIC12.41□□□□□ -0.42
LINC00477Q96M19 AC007950.2-201ENST00000615045 2347 ntBASIC12.41□□□□□ -0.42
LINC00477Q96M19 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 REXO1L6P-202ENST00000619970 1078 ntBASIC12.41□□□□□ -0.42
LINC00477Q96M19 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC12.41□□□□□ -0.42
LINC00477Q96M19 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LINC00477Q96M19 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
LINC00477Q96M19 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC12.4□□□□□ -0.42
LINC00477Q96M19 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
LINC00477Q96M19 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 AC006504.4-201ENST00000592118 1568 ntBASIC12.4□□□□□ -0.42
LINC00477Q96M19 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC12.4□□□□□ -0.42
LINC00477Q96M19 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC12.4□□□□□ -0.42
LINC00477Q96M19 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC12.4□□□□□ -0.42
LINC00477Q96M19 UPK3BP1-201ENST00000428678 509 ntBASIC12.4□□□□□ -0.42
LINC00477Q96M19 HCG4P8-203ENST00000443049 980 ntBASIC12.4□□□□□ -0.42
LINC00477Q96M19 SAPCD2P3-201ENST00000455031 850 ntBASIC12.4□□□□□ -0.42
LINC00477Q96M19 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC12.4□□□□□ -0.42
LINC00477Q96M19 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC12.4□□□□□ -0.42
LINC00477Q96M19 RPS15-207ENST00000591032 550 ntTSL 3 BASIC12.4□□□□□ -0.42
LINC00477Q96M19 RPS15-212ENST00000593052 629 ntTSL 2 BASIC12.4□□□□□ -0.42
LINC00477Q96M19 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC12.4□□□□□ -0.42
LINC00477Q96M19 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC12.4□□□□□ -0.42
LINC00477Q96M19 AC107918.4-202ENST00000641623 219 ntBASIC12.4□□□□□ -0.42
LINC00477Q96M19 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
LINC00477Q96M19 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC12.4□□□□□ -0.42
LINC00477Q96M19 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
LINC00477Q96M19 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC12.4□□□□□ -0.42
LINC00477Q96M19 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC12.4□□□□□ -0.42
LINC00477Q96M19 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
LINC00477Q96M19 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LINC00477Q96M19 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
LINC00477Q96M19 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
LINC00477Q96M19 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.43
LINC00477Q96M19 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
LINC00477Q96M19 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
LINC00477Q96M19 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00477Q96M19 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC12.39□□□□□ -0.43
LINC00477Q96M19 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC12.39□□□□□ -0.43
LINC00477Q96M19 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00477Q96M19 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00477Q96M19 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00477Q96M19 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00477Q96M19 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
LINC00477Q96M19 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LINC00477Q96M19 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms