Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 AC027612.4-201ENST00000605371 583 ntBASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 AC099522.2-201ENST00000607001 744 ntBASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 AC079781.4-201ENST00000641908 219 ntBASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 KRT18P28-201ENST00000453838 1332 ntBASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 AC131009.4-201ENST00000624048 1740 ntBASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 CA12-203ENST00000422263 2556 ntTSL 2 BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4CQ96CF2 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 MKNK2P1-201ENST00000437526 628 ntBASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 CCND1-203ENST00000536559 553 ntTSL 3 BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 IGHV3OR16-6-201ENST00000568775 360 ntBASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 WT1-AS_2.1-201ENST00000613208 137 ntBASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 GCK-202ENST00000345378 2421 ntTSL 2 BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP4CQ96CF2 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 UBALD1-205ENST00000590891 2641 ntBASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 AP006288.1-201ENST00000446065 395 ntBASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 KRT8P48-201ENST00000515599 1220 ntBASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 AC087641.1-201ENST00000557561 1021 ntBASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms