Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 AC073210.2-201ENST00000430369 194 ntBASIC10.25□□□□□ -0.77
LINC00643Q86TS7 ELP6-205ENST00000439305 880 ntTSL 2 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 PRTG-204ENST00000561292 833 ntTSL 3 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 TK1-204ENST00000590430 683 ntTSL 3 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 CYP2T3P-201ENST00000601990 817 ntBASIC10.25□□□□□ -0.77
LINC00643Q86TS7 AL589743.5-201ENST00000616611 1050 ntBASIC10.25□□□□□ -0.77
LINC00643Q86TS7 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 EGFEM1P-202ENST00000431685 1563 ntBASIC10.25□□□□□ -0.77
LINC00643Q86TS7 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 AC131212.3-201ENST00000624087 4219 ntBASIC10.25□□□□□ -0.77
LINC00643Q86TS7 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 SON-203ENST00000381679 7860 ntTSL 5 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 DSCAML1-203ENST00000527706 6099 ntTSL 5 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 AC092135.3-201ENST00000624151 1846 ntBASIC10.24□□□□□ -0.77
LINC00643Q86TS7 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 MDH2-205ENST00000461263 648 ntTSL 2 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 RASSF1-AS1-201ENST00000629828 790 ntBASIC10.24□□□□□ -0.77
LINC00643Q86TS7 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 AMT-221ENST00000538581 2038 ntTSL 2 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 STRCP1-201ENST00000509801 5328 ntBASIC10.24□□□□□ -0.77
LINC00643Q86TS7 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC10.24□□□□□ -0.77
LINC00643Q86TS7 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LINC00643Q86TS7 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms