Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SH3RF1Q7Z6J0 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SH3RF1Q7Z6J0 HARS-204ENST00000438307 1789 ntTSL 2 BASIC18.83■□□□□ 0.61
SH3RF1Q7Z6J0 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC18.83■□□□□ 0.61
SH3RF1Q7Z6J0 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SH3RF1Q7Z6J0 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.83■□□□□ 0.61
SH3RF1Q7Z6J0 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.83■□□□□ 0.61
SH3RF1Q7Z6J0 SLC22A20-204ENST00000530038 1673 ntBASIC18.83■□□□□ 0.61
SH3RF1Q7Z6J0 AL671710.1-201ENST00000610245 2349 ntBASIC18.83■□□□□ 0.61
SH3RF1Q7Z6J0 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC18.83■□□□□ 0.61
SH3RF1Q7Z6J0 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.83■□□□□ 0.61
SH3RF1Q7Z6J0 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
SH3RF1Q7Z6J0 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.83■□□□□ 0.61
SH3RF1Q7Z6J0 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SH3RF1Q7Z6J0 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SH3RF1Q7Z6J0 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 AC069120.2-201ENST00000524091 540 ntBASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 SRP9-204ENST00000619790 377 ntTSL 2 BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC18.83■□□□□ 0.6
SH3RF1Q7Z6J0 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 AC005052.1-201ENST00000625181 2492 ntBASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 MRPS18AP1-201ENST00000414458 589 ntBASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 SPDYE22P-201ENST00000582158 798 ntBASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 KRT8P39-201ENST00000396270 1433 ntBASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SH3RF1Q7Z6J0 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 SPDYE7P-202ENST00000420373 878 ntBASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 MMP17-203ENST00000535004 719 ntTSL 3 BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 AC091167.2-201ENST00000579581 588 ntBASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 MIR6080-201ENST00000617359 66 ntBASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 GCK-209ENST00000616242 2260 ntTSL 5 BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms