Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
HSPG2P98160 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
HSPG2P98160 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC9.98□□□□□ -0.81
HSPG2P98160 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC9.98□□□□□ -0.81
HSPG2P98160 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC9.98□□□□□ -0.81
HSPG2P98160 AC005357.2-202ENST00000590507 1060 ntBASIC9.98□□□□□ -0.81
HSPG2P98160 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
HSPG2P98160 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
HSPG2P98160 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
HSPG2P98160 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC9.97□□□□□ -0.81
HSPG2P98160 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC9.97□□□□□ -0.81
HSPG2P98160 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC9.97□□□□□ -0.81
HSPG2P98160 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC9.97□□□□□ -0.81
HSPG2P98160 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC9.97□□□□□ -0.81
HSPG2P98160 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC9.97□□□□□ -0.81
HSPG2P98160 MIR4750-201ENST00000584564 56 ntBASIC9.97□□□□□ -0.81
HSPG2P98160 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC9.97□□□□□ -0.81
HSPG2P98160 AC138649.2-201ENST00000615886 705 ntBASIC9.97□□□□□ -0.81
HSPG2P98160 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC9.97□□□□□ -0.81
HSPG2P98160 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC9.97□□□□□ -0.81
HSPG2P98160 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC9.97□□□□□ -0.81
HSPG2P98160 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC9.97□□□□□ -0.81
HSPG2P98160 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC9.97□□□□□ -0.81
HSPG2P98160 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC9.97□□□□□ -0.81
HSPG2P98160 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC9.97□□□□□ -0.81
HSPG2P98160 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 C1QBPP1-201ENST00000400117 770 ntBASIC9.97□□□□□ -0.81
HSPG2P98160 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC9.97□□□□□ -0.81
HSPG2P98160 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC9.97□□□□□ -0.81
HSPG2P98160 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC9.97□□□□□ -0.81
HSPG2P98160 CTBP2P4-201ENST00000513884 920 ntBASIC9.97□□□□□ -0.81
HSPG2P98160 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC9.97□□□□□ -0.81
HSPG2P98160 CENPX-208ENST00000584347 799 ntTSL 2 BASIC9.97□□□□□ -0.81
HSPG2P98160 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC9.97□□□□□ -0.81
HSPG2P98160 AC006453.4-201ENST00000636949 1252 ntBASIC9.97□□□□□ -0.81
HSPG2P98160 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC9.97□□□□□ -0.81
HSPG2P98160 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC9.97□□□□□ -0.81
HSPG2P98160 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.81
HSPG2P98160 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC9.97□□□□□ -0.81
HSPG2P98160 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC9.97□□□□□ -0.81
HSPG2P98160 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 RPL13AP25-201ENST00000484130 612 ntBASIC9.97□□□□□ -0.81
HSPG2P98160 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC9.97□□□□□ -0.81
HSPG2P98160 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC9.97□□□□□ -0.81
HSPG2P98160 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC9.97□□□□□ -0.81
HSPG2P98160 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC9.97□□□□□ -0.81
HSPG2P98160 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC9.97□□□□□ -0.81
HSPG2P98160 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC9.97□□□□□ -0.81
HSPG2P98160 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
HSPG2P98160 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC9.97□□□□□ -0.81
HSPG2P98160 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC9.97□□□□□ -0.81
HSPG2P98160 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC9.97□□□□□ -0.81
HSPG2P98160 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC9.97□□□□□ -0.81
HSPG2P98160 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC9.97□□□□□ -0.81
HSPG2P98160 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.81
HSPG2P98160 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC9.97□□□□□ -0.81
HSPG2P98160 AC135050.7-201ENST00000624508 2218 ntBASIC9.96□□□□□ -0.81
HSPG2P98160 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.81
HSPG2P98160 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
HSPG2P98160 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.81
HSPG2P98160 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC9.96□□□□□ -0.81
HSPG2P98160 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC9.96□□□□□ -0.81
HSPG2P98160 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
HSPG2P98160 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC9.96□□□□□ -0.81
HSPG2P98160 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC9.96□□□□□ -0.81
HSPG2P98160 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC9.96□□□□□ -0.81
HSPG2P98160 KLK3-207ENST00000595952 969 ntTSL 3 BASIC9.96□□□□□ -0.81
HSPG2P98160 AP000346.4-201ENST00000614827 381 ntBASIC9.96□□□□□ -0.81
HSPG2P98160 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC9.96□□□□□ -0.81
HSPG2P98160 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC9.96□□□□□ -0.81
HSPG2P98160 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
HSPG2P98160 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC9.96□□□□□ -0.81
HSPG2P98160 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC9.96□□□□□ -0.81
HSPG2P98160 AL021920.2-201ENST00000624828 1351 ntBASIC9.96□□□□□ -0.81
HSPG2P98160 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.81
HSPG2P98160 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC9.96□□□□□ -0.81
HSPG2P98160 AC138028.4-201ENST00000564984 1845 ntBASIC9.96□□□□□ -0.81
HSPG2P98160 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
HSPG2P98160 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
HSPG2P98160 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
HSPG2P98160 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC9.96□□□□□ -0.81
HSPG2P98160 WDR7-208ENST00000589935 544 ntTSL 4 BASIC9.96□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms