Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 IGHV3-52-201ENST00000519770 353 ntBASIC11.65□□□□□ -0.54
CKS1BP61024 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC11.65□□□□□ -0.54
CKS1BP61024 TK1-205ENST00000590862 642 ntTSL 3 BASIC11.65□□□□□ -0.54
CKS1BP61024 AL136038.4-201ENST00000603606 1261 ntBASIC11.65□□□□□ -0.54
CKS1BP61024 FAM87A-204ENST00000613235 858 ntBASIC11.65□□□□□ -0.54
CKS1BP61024 GXYLT1P4-201ENST00000613576 1192 ntBASIC11.65□□□□□ -0.54
CKS1BP61024 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
CKS1BP61024 AC004263.2-201ENST00000617183 678 ntBASIC11.65□□□□□ -0.54
CKS1BP61024 AL031432.5-201ENST00000641059 760 ntBASIC11.65□□□□□ -0.54
CKS1BP61024 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
CKS1BP61024 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC11.65□□□□□ -0.54
CKS1BP61024 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC11.65□□□□□ -0.54
CKS1BP61024 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
CKS1BP61024 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
CKS1BP61024 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CKS1BP61024 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CKS1BP61024 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
CKS1BP61024 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC11.65□□□□□ -0.55
CKS1BP61024 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.55
CKS1BP61024 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.55
CKS1BP61024 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
CKS1BP61024 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC11.65□□□□□ -0.55
CKS1BP61024 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
CKS1BP61024 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
CKS1BP61024 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 CYP2T1P-202ENST00000641596 2535 ntBASIC11.64□□□□□ -0.55
CKS1BP61024 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC11.64□□□□□ -0.55
CKS1BP61024 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
CKS1BP61024 CYP2D8P-201ENST00000433633 1490 ntBASIC11.64□□□□□ -0.55
CKS1BP61024 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
CKS1BP61024 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
CKS1BP61024 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 AC005840.4-201ENST00000541242 2494 ntBASIC11.64□□□□□ -0.55
CKS1BP61024 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 AC005915.1-201ENST00000624912 2018 ntBASIC11.64□□□□□ -0.55
CKS1BP61024 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC11.64□□□□□ -0.55
CKS1BP61024 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC11.64□□□□□ -0.55
CKS1BP61024 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC11.64□□□□□ -0.55
CKS1BP61024 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC11.64□□□□□ -0.55
CKS1BP61024 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
CKS1BP61024 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC11.64□□□□□ -0.55
CKS1BP61024 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC11.64□□□□□ -0.55
CKS1BP61024 GCSHP2-201ENST00000560971 527 ntBASIC11.64□□□□□ -0.55
CKS1BP61024 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC11.64□□□□□ -0.55
CKS1BP61024 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC11.64□□□□□ -0.55
CKS1BP61024 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC11.64□□□□□ -0.55
CKS1BP61024 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC11.64□□□□□ -0.55
CKS1BP61024 AC010947.1-201ENST00000623454 693 ntBASIC11.64□□□□□ -0.55
CKS1BP61024 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
CKS1BP61024 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC11.64□□□□□ -0.55
CKS1BP61024 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
CKS1BP61024 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 CICP23-201ENST00000605013 2741 ntBASIC11.64□□□□□ -0.55
CKS1BP61024 AP003680.1-201ENST00000598970 3660 ntBASIC11.64□□□□□ -0.55
CKS1BP61024 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC11.64□□□□□ -0.55
CKS1BP61024 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
CKS1BP61024 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CKS1BP61024 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
CKS1BP61024 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC11.63□□□□□ -0.55
CKS1BP61024 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms