Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.25■□□□□ 0.19
CXCL12P48061 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CXCL12P48061 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CXCL12P48061 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CXCL12P48061 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CXCL12P48061 PCDHB17P-201ENST00000539533 2393 ntBASIC16.25■□□□□ 0.19
CXCL12P48061 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.25■□□□□ 0.19
CXCL12P48061 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
CXCL12P48061 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
CXCL12P48061 BRWD1P1-201ENST00000401091 371 ntBASIC16.25■□□□□ 0.19
CXCL12P48061 MIR1908-201ENST00000410394 80 ntBASIC16.25■□□□□ 0.19
CXCL12P48061 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC16.25■□□□□ 0.19
CXCL12P48061 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC16.25■□□□□ 0.19
CXCL12P48061 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CXCL12P48061 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC16.25■□□□□ 0.19
CXCL12P48061 AP002490.2-201ENST00000524791 560 ntBASIC16.25■□□□□ 0.19
CXCL12P48061 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CXCL12P48061 USB1-203ENST00000539737 1212 ntTSL 2 BASIC16.25■□□□□ 0.19
CXCL12P48061 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC16.25■□□□□ 0.19
CXCL12P48061 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC16.25■□□□□ 0.19
CXCL12P48061 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC16.25■□□□□ 0.19
CXCL12P48061 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.25■□□□□ 0.19
CXCL12P48061 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CXCL12P48061 TECR-220ENST00000600083 1204 ntTSL 2 BASIC16.25■□□□□ 0.19
CXCL12P48061 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CXCL12P48061 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.25■□□□□ 0.19
CXCL12P48061 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.25■□□□□ 0.19
CXCL12P48061 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.25■□□□□ 0.19
CXCL12P48061 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.25■□□□□ 0.19
CXCL12P48061 KRT8P22-201ENST00000562317 1415 ntBASIC16.25■□□□□ 0.19
CXCL12P48061 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC16.25■□□□□ 0.19
CXCL12P48061 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.25■□□□□ 0.19
CXCL12P48061 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CXCL12P48061 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.25■□□□□ 0.19
CXCL12P48061 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC16.25■□□□□ 0.19
CXCL12P48061 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC16.25■□□□□ 0.19
CXCL12P48061 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CXCL12P48061 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.25■□□□□ 0.19
CXCL12P48061 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.25■□□□□ 0.19
CXCL12P48061 AL391256.1-201ENST00000443260 1855 ntBASIC16.25■□□□□ 0.19
CXCL12P48061 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CXCL12P48061 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.24■□□□□ 0.19
CXCL12P48061 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CXCL12P48061 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CXCL12P48061 AC093525.8-201ENST00000624099 1342 ntBASIC16.24■□□□□ 0.19
CXCL12P48061 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
CXCL12P48061 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CXCL12P48061 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CXCL12P48061 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.24■□□□□ 0.19
CXCL12P48061 GPAA1P2-202ENST00000606848 1787 ntBASIC16.24■□□□□ 0.19
CXCL12P48061 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.24■□□□□ 0.19
CXCL12P48061 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC16.24■□□□□ 0.19
CXCL12P48061 AL162726.2-201ENST00000438986 1017 ntBASIC16.24■□□□□ 0.19
CXCL12P48061 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CXCL12P48061 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC16.24■□□□□ 0.19
CXCL12P48061 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC16.24■□□□□ 0.19
CXCL12P48061 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.24■□□□□ 0.19
CXCL12P48061 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC16.24■□□□□ 0.19
CXCL12P48061 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC16.24■□□□□ 0.19
CXCL12P48061 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.24■□□□□ 0.19
CXCL12P48061 AC133539.2-201ENST00000604757 467 ntBASIC16.24■□□□□ 0.19
CXCL12P48061 AL022328.1-201ENST00000610050 478 ntBASIC16.24■□□□□ 0.19
CXCL12P48061 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.24■□□□□ 0.19
CXCL12P48061 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
CXCL12P48061 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CXCL12P48061 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CXCL12P48061 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
CXCL12P48061 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.24■□□□□ 0.19
CXCL12P48061 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
CXCL12P48061 AC092068.3-201ENST00000587894 2016 ntBASIC16.24■□□□□ 0.19
CXCL12P48061 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CXCL12P48061 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CXCL12P48061 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CXCL12P48061 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CXCL12P48061 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.24■□□□□ 0.19
CXCL12P48061 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.24■□□□□ 0.19
CXCL12P48061 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CXCL12P48061 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.24■□□□□ 0.19
CXCL12P48061 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
CXCL12P48061 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CXCL12P48061 TUBB1P2-201ENST00000422712 1306 ntBASIC16.23■□□□□ 0.19
CXCL12P48061 TUBB1P1-201ENST00000503144 1300 ntBASIC16.23■□□□□ 0.19
CXCL12P48061 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.23■□□□□ 0.19
CXCL12P48061 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.23■□□□□ 0.19
CXCL12P48061 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CXCL12P48061 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CXCL12P48061 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
CXCL12P48061 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CXCL12P48061 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC16.23■□□□□ 0.19
CXCL12P48061 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CXCL12P48061 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CXCL12P48061 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CXCL12P48061 AC092933.1-201ENST00000393644 945 ntBASIC16.23■□□□□ 0.19
CXCL12P48061 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CXCL12P48061 BCYRN1-201ENST00000418539 200 ntBASIC16.23■□□□□ 0.19
CXCL12P48061 AL355994.2-201ENST00000447882 704 ntBASIC16.23■□□□□ 0.19
CXCL12P48061 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC16.23■□□□□ 0.19
CXCL12P48061 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC16.23■□□□□ 0.19
CXCL12P48061 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.23■□□□□ 0.19
CXCL12P48061 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms