Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHMT2P34897 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHMT2P34897 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
SHMT2P34897 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.18■□□□□ 0.18
SHMT2P34897 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHMT2P34897 CYP2T1P-202ENST00000641596 2535 ntBASIC16.18■□□□□ 0.18
SHMT2P34897 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHMT2P34897 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
SHMT2P34897 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHMT2P34897 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHMT2P34897 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SHMT2P34897 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SHMT2P34897 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
SHMT2P34897 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SHMT2P34897 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
SHMT2P34897 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
SHMT2P34897 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SHMT2P34897 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHMT2P34897 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.18■□□□□ 0.18
SHMT2P34897 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
SHMT2P34897 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SHMT2P34897 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
SHMT2P34897 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
SHMT2P34897 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.17■□□□□ 0.18
SHMT2P34897 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
SHMT2P34897 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 AC211486.1-202ENST00000416371 468 ntBASIC16.17■□□□□ 0.18
SHMT2P34897 AC092474.2-201ENST00000424288 719 ntBASIC16.17■□□□□ 0.18
SHMT2P34897 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.17■□□□□ 0.18
SHMT2P34897 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.17■□□□□ 0.18
SHMT2P34897 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 AC211476.1-201ENST00000503899 468 ntBASIC16.17■□□□□ 0.18
SHMT2P34897 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.17■□□□□ 0.18
SHMT2P34897 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.17■□□□□ 0.18
SHMT2P34897 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.17■□□□□ 0.18
SHMT2P34897 FAM86C2P-203ENST00000528684 1004 ntBASIC16.17■□□□□ 0.18
SHMT2P34897 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.17■□□□□ 0.18
SHMT2P34897 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
SHMT2P34897 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.17■□□□□ 0.18
SHMT2P34897 GPALPP1-207ENST00000611650 899 ntBASIC16.17■□□□□ 0.18
SHMT2P34897 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
SHMT2P34897 AC006538.3-201ENST00000612495 578 ntBASIC16.17■□□□□ 0.18
SHMT2P34897 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
SHMT2P34897 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
SHMT2P34897 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 KRT8P39-201ENST00000396270 1433 ntBASIC16.17■□□□□ 0.18
SHMT2P34897 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.17■□□□□ 0.18
SHMT2P34897 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.17■□□□□ 0.18
SHMT2P34897 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SHMT2P34897 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHMT2P34897 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.16■□□□□ 0.18
SHMT2P34897 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHMT2P34897 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHMT2P34897 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHMT2P34897 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHMT2P34897 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHMT2P34897 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SHMT2P34897 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.16■□□□□ 0.18
SHMT2P34897 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHMT2P34897 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHMT2P34897 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHMT2P34897 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHMT2P34897 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHMT2P34897 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.16■□□□□ 0.18
SHMT2P34897 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHMT2P34897 AL355306.1-201ENST00000415580 579 ntBASIC16.16■□□□□ 0.18
SHMT2P34897 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.16■□□□□ 0.18
SHMT2P34897 AC004967.1-201ENST00000453589 447 ntBASIC16.16■□□□□ 0.18
SHMT2P34897 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.16■□□□□ 0.18
SHMT2P34897 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.16■□□□□ 0.18
SHMT2P34897 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.16■□□□□ 0.18
SHMT2P34897 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.16■□□□□ 0.18
SHMT2P34897 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.16■□□□□ 0.18
SHMT2P34897 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.16■□□□□ 0.18
SHMT2P34897 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHMT2P34897 AC099522.2-201ENST00000607001 744 ntBASIC16.16■□□□□ 0.18
SHMT2P34897 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.16■□□□□ 0.18
SHMT2P34897 AC139530.3-201ENST00000620344 690 ntBASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms