Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 MSRA-206ENST00000521209 814 ntTSL 3 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 CYGB-205ENST00000590175 830 ntTSL 3 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 AL773604.1-201ENST00000617417 272 ntBASIC12.64□□□□□ -0.39
HLA-DMBP28068 REXO1L3P-201ENST00000622202 1288 ntBASIC12.64□□□□□ -0.39
HLA-DMBP28068 AL139011.1-202ENST00000642063 584 ntBASIC12.64□□□□□ -0.39
HLA-DMBP28068 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 GGT4P-201ENST00000623672 1708 ntBASIC12.64□□□□□ -0.39
HLA-DMBP28068 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 AC024909.3-201ENST00000611513 2257 ntBASIC12.64□□□□□ -0.39
HLA-DMBP28068 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 MTHFR-217ENST00000641820 1569 ntBASIC12.64□□□□□ -0.39
HLA-DMBP28068 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 MED22-202ENST00000371999 987 ntTSL 3 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 AC021087.4-201ENST00000563761 564 ntBASIC12.63□□□□□ -0.39
HLA-DMBP28068 AP001005.1-201ENST00000571755 1248 ntBASIC12.63□□□□□ -0.39
HLA-DMBP28068 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 MIR4492-201ENST00000581627 80 ntBASIC12.63□□□□□ -0.39
HLA-DMBP28068 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 AC025062.2-201ENST00000605477 670 ntBASIC12.63□□□□□ -0.39
HLA-DMBP28068 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 AC022188.1-201ENST00000620960 1664 ntBASIC12.63□□□□□ -0.39
HLA-DMBP28068 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 AL596087.1-201ENST00000400979 1969 ntBASIC12.63□□□□□ -0.39
HLA-DMBP28068 AL365203.3-201ENST00000609742 2057 ntBASIC12.63□□□□□ -0.39
HLA-DMBP28068 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC12.63□□□□□ -0.39
HLA-DMBP28068 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HLA-DMBP28068 HLA-A-201ENST00000376802 1334 ntBASIC12.62□□□□□ -0.39
HLA-DMBP28068 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HLA-DMBP28068 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HLA-DMBP28068 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC12.62□□□□□ -0.39
HLA-DMBP28068 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms